| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3385586 | 200 (0.450) | 10 (0.030) | 8/98 | NT | 5.4% | noncoding (152/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385603 | NA (NA) | noncoding (169/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
Only 100 of 372 total aligned reads displayed.
CAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGG > CP009273/3385519‑3385653 | cAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT > 1:33273536‑M1/1‑68 (MQ=255)cAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT > 1:29559139‑M1/1‑68 (MQ=255)cAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT > 1:24252340‑M1/1‑68 (MQ=255)cAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT > 1:24410047‑M1/1‑68 (MQ=255) aaCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT < 1:28346028‑M1/67‑1 (MQ=255) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:26639769/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:403907/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:30582992/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:13548403/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:24983245/68‑1 (MQ=35) ggCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAg > 1:12352144/1‑67 (MQ=35) ggCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:7508399/68‑1 (MQ=35) ggCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:28657264/68‑1 (MQ=35) ggCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:34063988/68‑1 (MQ=35) ggCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCCGATAAGa < 1:11417919/68‑1 (MQ=25) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:30310205/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:31617182/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:31810722/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:4274646/1‑68 (MQ=35) tGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc < 1:33619637/68‑1 (MQ=35) tGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc < 1:10592557/68‑1 (MQ=35) tGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc < 1:9197790/68‑1 (MQ=35) tGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc < 1:8050229/68‑1 (MQ=35) tGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc < 1:6188427/68‑1 (MQ=35) gACCTACGGTTATGTTCCGTTTGTAGGCCTGATgcgacgctgtgcgtcttatcaggcctacaaacgga < 1:15527893‑M1/68‑36 (MQ=255) tGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:15042058/1‑68 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:34134503/1‑67 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:5296843/1‑67 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:4780448/1‑67 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:20362752/1‑67 (MQ=33) tCCGTTTGTAGGCCTGATACGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:36758767/1‑67 (MQ=25) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGTCTGCCTGATGCGGCGTAAACg < 1:6906672/68‑1 (MQ=255) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:30130702/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:23393281/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:6569118/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:14175943/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:12706924/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:32603371/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:6412456/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:21168420/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:21049710/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:5456566/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:19665695/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:18921496/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:1779766/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:33692586/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:8296804/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:33900581/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:27167941/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:28039598/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:14316924/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:24088561/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:20625608/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:21462056/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:23167709/68‑1 (MQ=35) tCCGATTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:2295064/1‑67 (MQ=25) ccggTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:15970862/65‑1 (MQ=1) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGc < 1:11540353/68‑1 (MQ=35) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGc < 1:1686263/68‑1 (MQ=35) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCtt < 1:17050471/67‑1 (MQ=35) tggctgaTgcgacgctgtgcgtcttatgaggcctacaaacggaacatacccgtaggtcggataaggcg < 1:34673478‑M1/65‑61 (MQ=255) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCg > 1:9707752/1‑67 (MQ=35) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCg > 1:1374380/1‑67 (MQ=35) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:15677677/68‑1 (MQ=35) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACCGCTGCCGGATGCGGCGTAAACGCCTTATCCg > 1:13978375/1‑67 (MQ=25) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:4921310‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:27747142‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:15411124‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:13227060‑M1/1‑6 (MQ=255) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:7292033/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:15827615/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:23849425/66‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:14715698/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:35041661/66‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:26945875/66‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:8933480/66‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:21669006/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:2264424/66‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAcc > 1:36633385/1‑68 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:36360495/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:32097880/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:16459675/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:16334354/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:28436748/67‑1 (MQ=35) ccTGAAAAGACGCACAGCGTCGCATCAGGAAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:7849206/1‑66 (MQ=255) cTGATgcgacgctgtgcgtcttatcaggcctacaaacggtacataaccgtaggtcggataaggcgttt > 1:18366570‑M1/1‑5 (MQ=255) cTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgttt > 1:22223294‑M1/1‑5 (MQ=255) cTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacaaaaccctaggtcggataaggccttt > 1:2891451‑M1/1‑5 (MQ=255) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAcc < 1:18640594/67‑1 (MQ=35) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt < 1:30026625/68‑1 (MQ=35) tGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgttta < 1:29789808‑M1/68‑65 (MQ=255) gATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttac > 1:36290710‑M1/1‑3 (MQ=255) tgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttacg < 1:35204850‑M1/67‑67 (MQ=255) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:32287662/1‑68 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:25895506/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:26204775/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:2938192/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:17681351/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:19908127/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:1030291/67‑1 (MQ=35) | CAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGG > CP009273/3385519‑3385653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |