| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3851553 = | 384 (0.860) | 36 (0.110) | 14/86 | NT | 12.2% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 225 (0.660) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
Only 100 of 645 total aligned reads displayed.
CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA > CP009273/3851537‑3851669 | gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:31022130/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:35544473/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:15439711/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:35703715/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:15023010/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:11633839/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:11023283/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGGTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:21094272/68‑1 (MQ=255) gcgACGTTGTTGGGCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:24050608/68‑1 (MQ=255) cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg < 1:9353383‑M2/4‑1 (MQ=255) cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg < 1:33413315‑M2/4‑1 (MQ=255) cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg < 1:10503842‑M2/4‑1 (MQ=255) cggtttgtacgcctgcacgggccggactatttaccggtatctacgcaaaccagtccggcccgtgCAgg < 1:13780792‑M2/4‑1 (MQ=255) ggtttgtacgcctgCACGGGCCGGCCTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGc < 1:21859410‑M1/54‑1 (MQ=255) ggtttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGGGCAGGc < 1:35316800‑M1/54‑1 (MQ=255) tttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAGGCg < 1:1659972‑M2/6‑1 (MQ=255) tttgtacgcctgCCCGGGCCGGACTGGTTAGGGTAGCTACCGGTAAATAGTCCGGCCCGTGCAGGCg < 1:10093630‑M1/55‑1 (MQ=255) tttgtacgcctgCACCGGCCGGACGGGTTTGCGTTGATACCGGTAAATAGTCCGGCCCGGGCAGGCGt < 1:19716536‑M1/56‑1 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTGCGGCCCGTGCAGGCGTACAAAcc < 1:2067908/68‑1 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc < 1:8493491/68‑1 (MQ=255) cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg < 1:25699131‑M1/64‑1 (MQ=255) cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg < 1:21428129‑M1/64‑1 (MQ=255) cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGGGCAGGCGGACAAACCg < 1:19194268‑M1/64‑1 (MQ=255) cctgCACGGGCCGGACTGGTTAGCGGAGATACCGGTAAATAGTCCGGCCCGGGCAGGCGTACAAACCg < 1:30378481‑M1/64‑1 (MQ=255) gTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCgg > 1:31195316/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGAAACCGGTAAATAGTCCGGCCCGTGCAGGCGTACCAACCGGt > 1:22502969/1‑68 (MQ=255) CACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa < 1:10287018‑M1/68‑1 (MQ=255) cgggccggactatttaccggtatcaacgcaaaccagcccggcccgtgCAGGCGTACAAACCGGTGAAc < 1:16300958‑M2/21‑1 (MQ=255) GGGCCGGACTGGTTAGCGTAGATACCGGTTAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGcaca < 1:11903748‑M1/68‑1 (MQ=255) GGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGgtgatca > 1:36053834‑M1/1‑65 (MQ=255) GGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACa < 1:18555756‑M1/68‑1 (MQ=255) GGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACa < 1:13667999‑M1/68‑1 (MQ=255) GGGCCGGACTGGGTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCCTACAAACCGGggaaga < 1:14699620‑M1/68‑3 (MQ=255) GGCCGGACTGGTTAGCGTAGATAACGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg < 1:32737629‑M1/68‑1 (MQ=255) GCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg > 1:5288632‑M1/1‑67 (MQ=255) ccGGACTGGTTTGCGTAGATACTGGTAAATAGTGCGGGTCGTGCAGGGGTACAAACCGGTGAACAgg < 1:5732234/67‑1 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:3239649‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:14296251‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:3978494‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:25282146‑M1/1‑67 (MQ=255) GACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTa < 1:36837802‑M1/68‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:26530413‑M1/68‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:6222781‑M1/68‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:22972931‑M1/68‑1 (MQ=255) CTGGTTCGCGAAGAGACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAgg > 1:2458552‑M1/1‑68 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:2003296‑M1/67‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:12757626‑M1/67‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:3479818‑M1/67‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:8321232‑M1/67‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:27086847‑M1/67‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:23462612‑M1/67‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:1595818‑M1/67‑1 (MQ=255) ttaccggtagctccgctacccagcccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:34528008‑M2/34‑1 (MQ=255) ttAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa > 1:2889113/1‑68 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGaa > 1:17101197/1‑68 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:21242340/67‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:34213618/67‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:13167562/67‑1 (MQ=255) aGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAAt < 1:27400221/68‑1 (MQ=255) gTAGATGCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:8998664/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:29759084/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:10766341/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:37004771/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:4980147/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:27918498/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:7150270/1‑68 (MQ=255) tAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaaa > 1:30719952/1‑68 (MQ=255) aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg < 1:37155739/68‑1 (MQ=255) atctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg < 1:9709600‑M2/41‑1 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:12327989/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:46105/1‑68 (MQ=255) tAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATAcc < 1:15323478/67‑1 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:18776746/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:6066822/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:20261807/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:26121668/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:36386544/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:24967454/1‑68 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:31910146‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:19497330‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:22181996‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:22736827‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:27699385‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:28283097‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:30214890‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACACGTCTAGGCGGAATTAAAGCGAATACCTTccg > 1:818364‑M2/14‑67 (MQ=255) gtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATAcc < 1:33640175‑M2/49‑1 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgccg > 1:24196840‑M2/11‑67 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgccg > 1:26264677‑M2/11‑67 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc < 1:1337792‑M2/56‑1 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc < 1:1564052‑M2/56‑1 (MQ=255) gcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:2926189‑M2/8‑68 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:31514769‑M2/7‑67 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:678468‑M2/7‑67 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:17486257‑M2/7‑67 (MQ=255) ccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:4229365‑M2/6‑66 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:2544627‑M2/65‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:6476669‑M2/65‑1 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:13067683‑M2/67‑1 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:3322744‑M2/67‑1 (MQ=255) | CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA > CP009273/3851537‑3851669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |