| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3920778 = | 415 (0.930) | 59 (0.170) | 11/88 | NT | 16.1% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 291 (0.830) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
Only 100 of 830 total aligned reads displayed.
ACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG > CP009273/3920752‑3920884 | gcaacggagaaagacggtcttcatcgGGGCGAAGGGGTGTTCCCGCACATGAAAGCCCGTGGCCCCGa < 1:30730211‑M1/42‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACCCGCACATGAAAGCCCTTCGCCCCGAt > 1:20070995/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGcccc < 1:18866740/65‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa < 1:29204777/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt > 1:739493/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt > 1:30431173/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt > 1:19157917/1‑68 (MQ=255) ttAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGa > 1:14733588/1‑68 (MQ=255) aGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg < 1:36707648/68‑1 (MQ=255) gggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg > 1:21853334/1‑67 (MQ=255) gggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg > 1:4856428/1‑67 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACCCGCACATGAAAGCCCTTCGCCCCGATGAAGAcc > 1:20207758/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGccc > 1:2042992/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc > 1:19767167/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc > 1:18527078/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc > 1:27259384/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCAGATGAAGAc > 1:13424955/1‑67 (MQ=255) aagacgggcttcatcggggcgaagggctttcatgtgcgagtacagccctgCGCCCCGATGAAGACCGt < 1:11846226‑M2/18‑1 (MQ=255) aagaccgtcttcatcggggcgaagggctttcatgtgcgggaacagcccttcgcccCGATGAAGACCGt < 1:18093868‑M2/13‑1 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc < 1:6353406/68‑1 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc < 1:31308956/68‑1 (MQ=255) gacggtcttcatagGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGtcg < 1:26622653‑M1/54‑2 (MQ=255) acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt < 1:2212341/68‑1 (MQ=255) acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt > 1:37101057/1‑68 (MQ=255) acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt > 1:15245890/1‑68 (MQ=255) aCTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtg > 1:16056672/1‑64 (MQ=255) ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTcc < 1:25422810/68‑1 (MQ=255) tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg > 1:13847432/1‑68 (MQ=255) tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg > 1:29050708/1‑68 (MQ=255) aGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGtt > 1:23431780/1‑68 (MQ=255) tcgGGGCGAAGGGCTGTGCACGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTCCGTTg < 1:17457354‑M1/64‑1 (MQ=255) tcgGGGCGAAGGGCTGTACACGCACATGAGAGCCCTTCGCCCCGATGAAGCCCGTCTTGCTCCGTTg < 1:36136240‑M1/64‑1 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc > 1:5259764/1‑68 (MQ=255) gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATTAAGACCGTCTTTCTCCGTTGCa < 1:3886867/68‑1 (MQ=255) gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc > 1:16398205/1‑67 (MQ=255) gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc > 1:4166728/1‑67 (MQ=255) gGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc < 1:24749685‑M1/65‑1 (MQ=255) gacgggctttcatgtgcgtgtccacccctgCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:28378956‑M2/37‑1 (MQ=255) gaagggctttcatgtgcgtgtaccgcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:27503308‑M2/32‑1 (MQ=255) gaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:21718543‑M2/32‑1 (MQ=255) gaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:33200989‑M2/32‑1 (MQ=255) gaagggctttcatgtccgggtaccgcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:14076053‑M2/32‑1 (MQ=255) GAAGGGCTGTACACGCACATGACAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt > 1:34252647‑M1/1‑68 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:21286224‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:36906706‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:9146242‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:1104523‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:8896646‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:33405910‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:12679591‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:8009394‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:29773179‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:3257961‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:7735469‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:15746661‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:32049836‑M1/1‑67 (MQ=255) GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:10019995‑M1/68‑1 (MQ=255) GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:7088332‑M1/68‑1 (MQ=255) ccttccatgggcgggtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:18251269‑M2/37‑1 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:27968772‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:24571605‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:2426382‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:2310198‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:33569953‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:31907721‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:14400078‑M1/1‑67 (MQ=255) acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa > 1:16884914/1‑67 (MQ=255) acacGCACATGAAAGCCCTTCGCCCCGAAGAAGACCCTCTTTCTCCGTTGCACTCGGTCTATGTTGa > 1:3531852/1‑67 (MQ=255) cacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGACTTTCTCCGTTGCACTCGGTCTATGTTGAcc > 1:12116554/1‑68 (MQ=255) acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTTACCa > 1:13161296/1‑68 (MQ=255) acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa > 1:4446892/1‑68 (MQ=255) cGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGGCCAg > 1:23746283/1‑68 (MQ=255) gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt < 1:5995332/68‑1 (MQ=255) gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt < 1:34527291/68‑1 (MQ=255) gcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt < 1:3477772‑M2/47‑1 (MQ=255) cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:35805091/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:9542665/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:17134584/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:20818967/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:26726555/1‑68 (MQ=255) caTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg < 1:25980201/68‑1 (MQ=255) aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:3148164/68‑1 (MQ=255) aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:10314810/68‑1 (MQ=255) aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:25663588/68‑1 (MQ=255) aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:2778314/68‑1 (MQ=255) aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:28733044/68‑1 (MQ=255) tGAAACCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGAc < 1:2118250/68‑1 (MQ=255) gtaccgcccccCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:8316792‑M2/56‑1 (MQ=255) aaGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg < 1:31041480/68‑1 (MQ=255) aaGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg < 1:33997600/68‑1 (MQ=255) agcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTggg < 1:10586108‑M2/56‑1 (MQ=255) gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 1:30119694‑M2/12‑68 (MQ=255) gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 1:22553174‑M2/12‑68 (MQ=255) gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 1:1944020‑M2/12‑68 (MQ=255) gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 1:17814332‑M2/12‑68 (MQ=255) gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 1:12974386‑M2/12‑68 (MQ=255) ttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgc < 1:5032393‑M2/61‑1 (MQ=255) tcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg < 1:36454676‑M2/62‑1 (MQ=255) cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa > 1:11413305‑M2/4‑68 (MQ=255) cGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATgg < 1:14998114/68‑1 (MQ=255) | ACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG > CP009273/3920752‑3920884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |