New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3999175 =421 (0.950)22 (0.060) 11/96 NT 5.9% intergenic (+84/‑49) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase
?CP009273 3999197 = 336 (0.880)intergenic (+106/‑27) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase

Only 100 of 544 total aligned reads displayed.

CCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCT  >  CP009273/3999130‑3999262
                                                                   |                                                                 
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                   <  1:10904067/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                   <  1:13079239/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                   >  1:20696826/1‑68 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                   <  1:17964868/68‑1 (MQ=255)
 cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                                                  <  1:10255495/68‑1 (MQ=255)
 cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                                                  <  1:26607231/68‑1 (MQ=255)
    gATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGttttt                                                               >  1:7465188/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                              >  1:7575191/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                              >  1:6653804/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                              >  1:33899401/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                              >  1:24302309/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                              >  1:21266862/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                              >  1:20654461/1‑68 (MQ=255)
      ttACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTAt                                                             <  1:36565120/68‑1 (MQ=255)
        aCCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTAtt                                                            >  1:25235393/1‑67 (MQ=255)
         cccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTc                                                          >  1:3033880/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                         >  1:13734776/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                         >  1:3802070/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                         >  1:24837692/1‑68 (MQ=255)
           ctctCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                                        >  1:22739868/1‑68 (MQ=255)
            tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAgg                                                       <  1:17299780/68‑1 (MQ=255)
            tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                                        >  1:4339646/1‑67 (MQ=255)
            tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                                        >  1:22946165/1‑67 (MQ=255)
            tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                                        >  1:3461420/1‑67 (MQ=255)
             gccacattcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAgg                                                       <  1:5626512‑M2/13‑1 (MQ=255)
             ctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGc                                                      <  1:8514157/68‑1 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                                     <  1:12512971/68‑1 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                    >  1:5374733/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                    >  1:23338595/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                    >  1:35199258/1‑67 (MQ=255)
                acattcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAAt                                                   <  1:31498650‑M2/17‑1 (MQ=255)
                acattcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAAt                                                   <  1:34142949‑M2/17‑1 (MQ=255)
                  agaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                                                 >  1:33098679/1‑68 (MQ=255)
                  agaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                                                 >  1:7083668/1‑68 (MQ=255)
                  agaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                                                 >  1:9130141/1‑68 (MQ=255)
                   ttcaccccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTGTTATTTGAGGCAATCgg                                                <  1:36695790‑M1/42‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                   <  1:16300992/65‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                   <  1:10606392/65‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                   <  1:19100526/65‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                   <  1:11423683/65‑1 (MQ=255)
                    tcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAATCggg                                               <  1:11011585‑M2/21‑1 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               >  1:7968289/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               >  1:34306565/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               >  1:31210580/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               >  1:23672891/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               >  1:21563954/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               <  1:14944535/68‑1 (MQ=255)
                     caccccgaatgcctgaaataaaaacaggcgctagttgcagcgcctgTTTTTATTTCAGGCAATCgggg                                              <  1:19935267‑M2/22‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGGGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               <  1:30688629/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               <  1:17620081/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               <  1:32309668/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               <  1:24038083/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               <  1:11859647/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                               <  1:36916436/67‑1 (MQ=255)
                       ccccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAtcgggggg                                            <  1:19668252‑M1/46‑3 (MQ=255)
                        aaaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                                           >  1:2625302/1‑68 (MQ=255)
                         aaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGaa                                          <  1:35805217/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                         >  1:31320902/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                         >  1:4934622/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                         <  1:3289049/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                         >  1:17025601/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                         <  1:14174528/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                         >  1:9514215/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                         <  1:13414683/68‑1 (MQ=255)
                           gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                                        >  1:29661832/1‑68 (MQ=255)
                           gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                                        >  1:28911355/1‑68 (MQ=255)
                           gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                                        >  1:8210184/1‑68 (MQ=255)
                           gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                                        >  1:26933818/1‑68 (MQ=255)
                              tgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTTTTTCAGGCAATCGGGGTGAAtgtg                                      <  1:2465816‑M1/52‑1 (MQ=255)
                              tgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCGGTTTTTATTTCAGGCAATCGGGGTGAAtgtg                                      <  1:19532045‑M1/52‑1 (MQ=255)
                                 ctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGATTGTGgcg                                   <  1:16073563‑M1/55‑1 (MQ=255)
                                  aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCa                                 >  1:15695179/1‑68 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg                               <  1:20205441/67‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg                               <  1:12604995/67‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAg                                <  1:19258623/66‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAg                                <  1:4810570/66‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAg                                <  1:6303057/66‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc                              <  1:25813275/68‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc                              >  1:29278359/1‑68 (MQ=255)
                                     aataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc                              <  1:20878223‑M2/38‑1 (MQ=255)
                                      tctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTCGCGCAGGCg                             <  1:30008749/68‑1 (MQ=255)
                                        tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa                           <  1:18853361/68‑1 (MQ=255)
                                        tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa                           <  1:19811169/68‑1 (MQ=255)
                                        tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa                           <  1:31855570/68‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg                       >  1:28499800/1‑68 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg                       >  1:14574758/1‑68 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt                        <  1:33486254/67‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt                        <  1:22398274/67‑1 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                  >  1:18711658‑M1/1‑67 (MQ=255)
                                                      aaaaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTgg             >  1:35436547/1‑68 (MQ=255)
                                                       aaaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTgg             <  1:2182370/67‑1 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGCCTGTGGCGCAGGAGGAAGTGTTGAATCTGGAGt          <  1:34532563/68‑1 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg           >  1:1011751/1‑67 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg           >  1:8671692/1‑67 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg           >  1:15458168/1‑67 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGt          <  1:12382170/68‑1 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGt          <  1:16767034/68‑1 (MQ=255)
                                                          tAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGt          >  1:28162226/1‑67 (MQ=255)
                                                            gcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCg       >  1:27642113‑M2/8‑68 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa     <  1:18395528‑M2/63‑1 (MQ=255)
                                                                   |                                                                 
CCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCT  >  CP009273/3999130‑3999262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.