| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4049883 | NA (NA) | 10 (0.030) | 6/98 | NT | NA | noncoding (53/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 4049915 | NA (NA) | noncoding (85/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 810 total aligned reads displayed.
TCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAAC > CP009273/4049848‑4049982 | tCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGC < 1:31105468‑M2/68‑1 (MQ=255)tCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGC < 1:19763064‑M2/68‑1 (MQ=255)tCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGC > 1:3784166‑M2/1‑68 (MQ=255) aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGt < 1:2776856/68‑1 (MQ=255) ccTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTg > 1:13872278/1‑68 (MQ=255) tGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAt < 1:29480539/68‑1 (MQ=255) gCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtg > 1:31354070/1‑68 (MQ=255) tCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt > 1:5577999/1‑67 (MQ=255) tCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt > 1:7875293/1‑67 (MQ=255) tCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt > 1:20586956/1‑67 (MQ=255) gcgtacatcgctctgcgtcgcgaagaagatgaccgcgtgcgtatgactcCGCATCCGGCGTGATGTGc > 1:11170050‑M1/50‑68 (MQ=255) ccGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt > 1:5831722/1‑66 (MQ=255) ccGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt > 1:24617832/1‑66 (MQ=255) ccGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt > 1:17981712/1‑66 (MQ=255) ccGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt > 1:10489682/1‑66 (MQ=255) ccGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGc < 1:15229097/68‑1 (MQ=255) ccGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGc < 1:16421175/68‑1 (MQ=255) ccTACCACATCATCTCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg > 1:36848125/1‑67 (MQ=255) ccTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg > 1:20977309/1‑67 (MQ=255) cTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGcc > 1:1239368/1‑68 (MQ=255) cTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGcc < 1:1325582/68‑1 (MQ=255) cTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGcc > 1:15481749/1‑68 (MQ=255) tACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCctacacggtgatgat > 1:931029‑M2/1‑53 (MQ=255) cacaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCCTCCGGCGTGATGTGCTTGCCACCg > 1:34330826/1‑68 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCTTCGCATCCGGAGTGATGTGCTTGCCACCGa > 1:24720688/1‑68 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCCCCGa > 1:2619007/1‑68 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa > 1:17282347/1‑68 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa > 1:18632959/1‑68 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa > 1:28010160/1‑68 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa > 1:22501929/1‑68 (MQ=255) acaTCAGCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa < 1:32592482/68‑1 (MQ=255) tctgcgtcgcgaagaagatgaccgcgtgcgtatgactcCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:30203984‑M1/39‑68 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:26805685/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:12132748/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:304995/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:28268855/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:4088321/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:34117589/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:32996896/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:18305080/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATCTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:23285805/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:31859025/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:20044786/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:24961927/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:12935890/68‑1 (MQ=255) atcagcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:35062348/68‑1 (MQ=255) catcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc > 1:29111286/1‑68 (MQ=255) cccGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:24320257/2‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCCCCGATCCCAgg > 1:15687871/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:19089714/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:8336427/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:25859417/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:30655733/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:2648823/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:27245369/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:36436250/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGc < 1:10913169/68‑1 (MQ=255) cGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:6055919/1‑65 (MQ=255) cGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:2215735/1‑65 (MQ=255) cGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:8660037/1‑65 (MQ=255) cGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCt < 1:4995119/68‑1 (MQ=255) gtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:34729589/67‑1 (MQ=255) gtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:9009117/67‑1 (MQ=255) gtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:14462001/67‑1 (MQ=255) gtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:17659915/67‑1 (MQ=255) gtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:23598929/67‑1 (MQ=255) gtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:7129377/67‑1 (MQ=255) gtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:10013686/67‑1 (MQ=255) aGGCCGGATAAGACGCATTTGCGTCGCATCAGCCGTGATGTGCTTGCCACCGATACCAGGCATGCCag > 1:7473523/1‑68 (MQ=37) gCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:21494217/1‑68 (MQ=255) gCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:6461099/1‑68 (MQ=255) ccGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:4584481/1‑67 (MQ=255) ccGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:14143158/1‑67 (MQ=255) ccGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:14291094/1‑67 (MQ=255) ccGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:1139464/1‑67 (MQ=255) ccGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:35411441/1‑67 (MQ=255) ccGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:28803768/1‑67 (MQ=255) ccGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:16906260/1‑67 (MQ=255) ccGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:33476859/1‑67 (MQ=255) ccGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:21297223/1‑67 (MQ=255) ccGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:6749311/1‑67 (MQ=255) tAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGc > 1:4364778/1‑68 (MQ=255) aCGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGaaa > 1:32314315/1‑68 (MQ=255) aCGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGaaa > 1:12637044/1‑68 (MQ=255) aCGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAGCCCAGGCCTGCCAGAGACAGCCGaaa > 1:25326807/1‑68 (MQ=255) cGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCCCCGATCCCAGGCCTGCCAGAGACAGGCGaaaa > 1:25576021/1‑68 (MQ=255) cGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGaaaa > 1:2172084/1‑68 (MQ=255) aTTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGtt < 1:13515696/68‑1 (MQ=255) aTTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGtt < 1:27457092/68‑1 (MQ=255) ATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCaa > 1:945551‑M1/1‑67 (MQ=255) tCCGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtca < 1:28437062‑M2/68‑63 (MQ=255) TCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACt > 1:16035738‑M1/1‑68 (MQ=255) cGGCctacacggttatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagc > 1:29949645‑M2/1‑4 (MQ=255) cGGCctacacggtgatgatgtggtaggccggagcaggtgcgtcgctctccaacgtgaagtttgtcagc > 1:35897157‑M2/1‑4 (MQ=255) cGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagc > 1:24217887‑M2/1‑4 (MQ=255) cGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagc > 1:23892301‑M2/1‑4 (MQ=255) cGGCctacacggagatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagc > 1:22952588‑M2/1‑4 (MQ=255) cctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagctat < 1:30904673‑M2/68‑68 (MQ=255) cctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagcta < 1:147817‑M2/67‑67 (MQ=255) cctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagcta < 1:10285186‑M2/67‑67 (MQ=255) | TCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAAC > CP009273/4049848‑4049982 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |