| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 516 (1.160) | 57 (0.160) | 13/90 | NT | 12.8% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 362 (1.010) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 673 total aligned reads displayed.
GCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTT > CP009273/4190044‑4190176 | ccTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaa > 1:4722887/1‑68 (MQ=255) ccTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaa > 1:10771339/1‑68 (MQ=255) atacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTg < 1:27013018‑M1/44‑1 (MQ=255) acacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑Gtggg < 1:30607623‑M1/46‑2 (MQ=255) acacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTg < 1:17817965‑M1/44‑1 (MQ=255) tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCt < 1:32638634/68‑1 (MQ=255) acgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTa < 1:13557634‑M1/48‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTAt < 1:25021109/67‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATc > 1:12873537/1‑68 (MQ=255) accgatagccacttttTTTCGCCCCCCGTGGGGTCTACATTTGGGGGGGGAAAAAAA‑GTGGCTATCgg < 1:12593454‑M1/52‑1 (MQ=255) accgatagccacttttTTTCGCCCCCCGTGGGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCgg < 1:31965625‑M1/52‑1 (MQ=255) accgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCgg < 1:10218092‑M1/52‑1 (MQ=255) accgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCgg < 1:24289623‑M1/52‑1 (MQ=255) cctatagccactttttttcgccccccaaatgtcgaccagacggggggcgaaaAAAA‑GTGGCTATCGGt < 1:19009174‑M2/16‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCgg < 1:21436344/67‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGt < 1:35746879/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGt < 1:4183151/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGt < 1:6934441/68‑1 (MQ=255) ccTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTg < 1:23428657/68‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGc > 1:24543371/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGc > 1:19217851/1‑68 (MQ=255) tGGATTCTTCCCTTTCGCCACCCGTCTGGGCTACATTTTGGGGGCGAAAAAAA‑GTGGCTATCGGTGCg < 1:12317723/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACTTTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCg < 1:16038189/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCg < 1:15020344/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCg < 1:10509158/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCg < 1:35293392/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCg < 1:17270248/68‑1 (MQ=255) gatagccacattttttcgcccccaaatgtagaccagacggggggcgaaaAAAA‑GTGGCTATCGGTGCg < 1:31100161‑M2/19‑1 (MQ=255) tagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAA‑GTGGCTATCGGTGCgt < 1:34791963‑M2/20‑1 (MQ=255) tagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAA‑GTGGCTATCGGTGCg < 1:1688465‑M2/19‑1 (MQ=255) tagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAA‑GTGGCTATCGGTGCg < 1:1695835‑M2/19‑1 (MQ=255) ggAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgt < 1:29427429/68‑1 (MQ=255) agccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtg < 1:27297445‑M1/58‑1 (MQ=255) aGTCTTCGCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGCTGCgtgt > 1:34622422/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGATAAAAA‑GTGGCTATCGGTGCgtgt > 1:26094886/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtgt > 1:27484136/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtgt > 1:5004964/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtgt > 1:22059257/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtgt > 1:5524269/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtgt > 1:26383907/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtgt > 1:33177785/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtgt > 1:13949988/1‑68 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtgt < 1:18591590/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtgt < 1:33888278/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCgtgt < 1:1556536/67‑1 (MQ=255) ccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTa < 1:35945684‑M1/60‑1 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt > 1:16734275/1‑68 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt > 1:22872546/1‑68 (MQ=255) cactttttttcgccccccaactgtagaccagacggggggcgaaaAAAA‑GTGGCTATCGGTGCGTGTAt < 1:20783675‑M2/24‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:6134121/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:8342419/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:1453579/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:9351432/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:7999282/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:30814814/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:3029665/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:1000335/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:15215432/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:20518376/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:22399562/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:23826735/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:24709916/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTATGGTCTACATTTGGGTGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:384822/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTATGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTAt < 1:28381112/67‑1 (MQ=255) tCCCTTTCGCCCCCCGTCTTGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCa < 1:32374498/68‑1 (MQ=255) tCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCa < 1:34977579/68‑1 (MQ=255) ttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAAGTGGCTATCGGTGCGTGTATGCAg < 1:19774764‑M1/66‑1 (MQ=255) ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAgg < 1:31475529/68‑1 (MQ=255) ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAgg < 1:33358112/68‑1 (MQ=255) cTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGga > 1:11680004/1‑68 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGgaga < 1:35534753‑M1/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGgaga > 1:21054985‑M1/1‑68 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGgaga < 1:23954269‑M1/68‑1 (MQ=255) cgccccccaaatgtagaccagacggggggcgaaaAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGt < 1:6639778‑M2/34‑1 (MQ=255) CGCCCCCCGTCAGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:33530060‑M1/1‑68 (MQ=255) CCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt < 1:25583322‑M1/68‑1 (MQ=255) CCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt < 1:19573408‑M1/68‑1 (MQ=255) CCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt > 1:28680761‑M1/1‑68 (MQ=255) CCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTa < 1:11331170‑M1/68‑1 (MQ=255) CCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt < 1:8579920‑M1/68‑1 (MQ=255) CGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:19959763‑M1/1‑66 (MQ=255) tCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTg > 1:8849271/1‑68 (MQ=255) tCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTATg > 1:16431/1‑68 (MQ=255) cTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTg > 1:25776652/1‑67 (MQ=255) cTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAtt > 1:29171734/1‑67 (MQ=255) aTTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:28848634/1‑67 (MQ=255) tttGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:7376705/1‑68 (MQ=255) tttGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:28978107/1‑68 (MQ=255) tttGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:32762980/1‑68 (MQ=255) tGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:18089689/1‑68 (MQ=255) tGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:28080790/1‑68 (MQ=255) gggggcgaaaAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:4540642‑M2/11‑66 (MQ=255) gggggcgaaaAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:2031433‑M2/11‑66 (MQ=255) gggggcgaaaAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:5724192‑M2/11‑66 (MQ=255) gggggcgaaaAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:36695228‑M2/11‑66 (MQ=255) gggggcgaaaAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:36366785‑M2/11‑66 (MQ=255) gggggcgaaaAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:13324378‑M2/11‑66 (MQ=255) ggggcgaaaAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc < 1:2968043‑M2/58‑1 (MQ=255) ggggcaaaaAAAA‑GTGGCTAGCGGTGCGTGTATGCTGGAGAGTGATATTCTGGCATTTCCGTCGCAc < 1:14187270‑M2/58‑1 (MQ=255) gaaaAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:7683780‑M2/63‑1 (MQ=255) | GCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAA‑GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTT > CP009273/4190044‑4190176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |