| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1426905 | NA (NA) | 17 (0.040) | 4/96 | NT | 95.2% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1628833 = | 1 (0.000) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fiber assembly protein | |||||
Only 100 of 178 total aligned reads displayed.
ATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCG > CP009273/1628766‑1628900 | ttcaacagtgatgtgtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:1676192‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcctcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:2373691‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:993370‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:9375527‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:10930427‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:26320335‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:17073147‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:32773684‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:34510424‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:14364308‑M2/1‑1 (MQ=255) caacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt < 1:18545920‑M2/3‑1 (MQ=255) caacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt < 1:14580526‑M2/3‑1 (MQ=255) caacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt < 1:36890123‑M2/3‑1 (MQ=255) acagtgattagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:20206117‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:28085037‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:26064051‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:21458531‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:22054986‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:790160‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:7295432‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:24287919‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:24304767‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:26212323‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:6050740‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:36618715‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:5899797‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:28351213‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:5622683‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:32322309‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:4969460‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:33811741‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:34040552‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:3855063‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:10411332‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:16384305‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:17891262‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:14659921‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:11742248‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:12069108‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:18499320‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtcgcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:20521356‑M2/64‑68 (MQ=255) cagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:306887‑M2/63‑68 (MQ=255) cagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:31920320‑M2/63‑68 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:11581326‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:10244803‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:8500000‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:817973‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:16296586‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:32915331‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:15929441‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:15754155‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:15298105‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:35096842‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:5550866‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:35547765‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:36377955‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:7764495‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:13779560‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:3944929‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:4532577‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:12479503‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:13196611‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:20087615‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:19441219‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:29362475‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:2856734‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:22891573‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:19342903‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:18135258‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:27164177‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:24679199‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:27063987‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:25203484‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:10221411‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtctatgacgtggCTTCCg > 1:25282180‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtatatgacgtggCTTCCg > 1:22439401‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagagcatcggggtaaaacggtttatgacgtggCTTCCg > 1:8509059‑M2/62‑67 (MQ=255) agtgatgagtcatcgtgccatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:29709679‑M2/62‑67 (MQ=255) agtgatgagtcatcgtagcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:21283765‑M2/62‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgccgtggCTTCCGGCg > 1:219051‑M2/59‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCgg < 1:29386664‑M2/7‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCgg < 1:6989251‑M2/7‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCg > 1:16930‑M2/59‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCg > 1:23111272‑M2/59‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCg > 1:34849743‑M2/59‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCGa < 1:31361197‑M2/10‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTACCcgcg > 1:14784275‑M2/59‑67 (MQ=255) acggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTGCGGTTACGGACCGAGTTCAGaaat > 1:9137860‑M2/17‑68 (MQ=255) acggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGCCCGAGTTCAGaaat > 1:24008603‑M2/17‑68 (MQ=255) gacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgc > 1:30022996‑M2/8‑68 (MQ=255) gacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGGTGAGAAATAAATAAcgc > 1:22113666‑M2/8‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGCCCGAGTTCAGAAATAAATAAcgcg > 1:17259370‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:33078546‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:35668072‑M2/7‑68 (MQ=255) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:22699907/68‑1 (MQ=33) gCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGCCCGAGTTCAGAAATAAATAACGCGTCGcc > 1:34151983‑M2/2‑68 (MQ=255) ccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGcc < 1:26601289/68‑1 (MQ=35) ccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGcc > 1:31036600/1‑68 (MQ=35) CTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACTCGTCGCCg > 1:18052794‑M2/1‑68 (MQ=255) CTTCCGGCGATAACCAGGTAACAATTTCCGGTAAAGGACCCAGTTCAGAAAAAAATAACCCGTCGCCg > 1:1272913‑M2/1‑68 (MQ=255) | ATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCG > CP009273/1628766‑1628900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |