| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3031308 = | 409 (0.920) | 17 (0.040) | 7/98 | NT | 5.9% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 188 (0.480) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
Only 100 of 629 total aligned reads displayed.
GCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAACGGCGCAGC > CP009273/3031259‑3031391 | gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:32342990/68‑1 (MQ=255)gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:2051715/68‑1 (MQ=255)gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:25412312/68‑1 (MQ=255)gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:8526085/68‑1 (MQ=255)gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:27424675/68‑1 (MQ=255)gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:33315505/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCACCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAcc < 1:8764313/67‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCGGTTGCTGCCAGGGCAGCATACCt < 1:2260539/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:15875188/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:6108457/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:20162936/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:17797935/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:24120246/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:14284467/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:10020265/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:26192297/1‑68 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:8466120/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:33805708/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:12369837/1‑68 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:29904175/68‑1 (MQ=255) gAAAAGCGGTGTAAAGGATCTCAACGGCCTTTTCTACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:4782788/1‑68 (MQ=255) cggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctgccctggcagcaTAc < 1:7858517‑M2/3‑1 (MQ=255) cggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATAc > 1:18860971‑M1/47‑65 (MQ=255) cgcggagaacgcagtgcgcaagaactcgaacgcagcgttaaaggtaAGCTGCCAGGGCAGCATACCt > 1:7741903‑M1/47‑67 (MQ=255) gTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGc < 1:21286681/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:23268401/68‑1 (MQ=255) aaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGtt < 1:19104767/68‑1 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:32083423/1‑68 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:7399999/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:32997919/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:34911825/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:10340896/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:16173579/1‑68 (MQ=255) tctcAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGt < 1:13907610/68‑1 (MQ=255) ggtcggtgatttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt > 1:10605945‑M2/21‑68 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:32688203/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:23655424/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:12071055/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:11046253/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:185059/68‑1 (MQ=255) aaCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:27091912/1‑68 (MQ=255) aaCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACATTTAACACTGCGTTCCAGTTCtt > 1:28896268/1‑68 (MQ=255) aCGGCCTTTTCGCCGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:4522914/1‑67 (MQ=255) aCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:17040548/1‑67 (MQ=255) tggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcgc < 1:14690561‑M1/47‑1 (MQ=255) gCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcgc > 1:31787627/1‑68 (MQ=255) gCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcgc > 1:33498725/1‑68 (MQ=255) ccTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcgc < 1:16521506/67‑1 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTTCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCAc < 1:37118675/68‑1 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcgc > 1:28434026/1‑66 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCAc < 1:29119312/68‑1 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCAc < 1:2481353/68‑1 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCAc < 1:5550933/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:13092743/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:24549589/68‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:12913374‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:18281972‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTCCGTTCCAGTTCTTGCGCACTg < 1:20764546‑M2/57‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:23503845‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:22248482‑M2/58‑1 (MQ=255) tcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCg < 1:14097795‑M2/59‑1 (MQ=255) tcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCg < 1:21747129‑M2/59‑1 (MQ=255) tcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCg < 1:30182665‑M2/59‑1 (MQ=255) cgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt < 1:15185801‑M2/60‑1 (MQ=255) gccgCTCAGTTGCTGCCAGGGCAGCATAGCTTTAACACTGCGTTCCAGTTCTTGAGCACTGCGTACt > 1:9156710‑M2/5‑67 (MQ=255) gccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:19467168‑M2/5‑67 (MQ=255) gccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:2949781‑M2/5‑67 (MQ=255) gccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:36252071‑M2/5‑67 (MQ=255) gccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:26738648‑M2/5‑67 (MQ=255) gccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:690822‑M2/5‑67 (MQ=255) cgCTCAGTTGCTGCCAGTGCAGCATACCTTTAACACAGCGTTCCAGTTCTTGCGCACTGCGTACtca < 1:25674766‑M2/65‑2 (MQ=255) tCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg > 1:19927967/1‑67 (MQ=255) aggtatgctgccctggcagcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg > 1:13667566‑M2/22‑67 (MQ=255) gtatgctgccctggcagcaTACGTTTAGCGGTGCGTTCCAGTTCTTGCGCACTGCGTCGTCCCCGgcg > 1:36084246‑M2/20‑67 (MQ=255) gtatgctgcccgggcagcaTACCTTTAGCCCGGCGTTCGAGTTCTTGCGCACTGCGTActcccag > 1:36972687‑M2/20‑63 (MQ=255) ttGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTg > 1:36657490/1‑67 (MQ=255) TGCTGCGAGGTCAGGATACCTTTATCACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTgg > 1:11513501‑M1/1‑67 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTgg > 1:7195911‑M1/1‑67 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTgg > 1:16835763‑M1/1‑67 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTgg > 1:4214406‑M1/1‑67 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:21435489‑M1/68‑1 (MQ=255) gctgccatggcagcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg < 1:24282140‑M2/53‑1 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:15490796‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:17427504‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:10761284‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:19648414‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACAGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:3050682‑M1/1‑68 (MQ=255) TGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGta > 1:22788518‑M1/1‑68 (MQ=255) TGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGta > 1:3159092‑M1/1‑68 (MQ=255) CCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGtata < 1:31293920‑M1/68‑1 (MQ=255) CCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGtata < 1:8245451‑M1/68‑1 (MQ=255) CCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGtata < 1:5152459‑M1/68‑1 (MQ=255) CCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGtata < 1:23099919‑M1/68‑1 (MQ=255) CAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATaa > 1:13387777‑M1/1‑68 (MQ=255) cagcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAACGgc > 1:3823042‑M2/6‑68 (MQ=255) agcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAACGgc < 1:27945254‑M2/63‑1 (MQ=255) aTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAACGGCGCa > 1:30672457‑M2/2‑67 (MQ=255) aTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACACCCCGGCTGGCGTATAAACGGCGCa < 1:34266492‑M2/66‑1 (MQ=255) tACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAACCGGCgcagc > 1:9277379/1‑68 (MQ=255) tACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAACGGCgcagc < 1:35650165/68‑1 (MQ=255) | GCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAACGGCGCAGC > CP009273/3031259‑3031391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |