New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3256491 =558 (1.250)30 (0.080) 13/90 NT 6.6% coding (529/1209 nt) tdcD propionate kinase/acetate kinase C, anaerobic
?CP009273 3256545 = 403 (1.130)coding (475/1209 nt) tdcD propionate kinase/acetate kinase C, anaerobic

Only 100 of 728 total aligned reads displayed.

TAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGT  >  CP009273/3256478‑3256611
                                                                   |                                                                  
 aGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCGTCATAATATTTCCACGGCAg                                                                    >  1:16986530/1‑67 (MQ=255)
 aGCGGTGCGACATGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAg                                                                    >  1:24947080/1‑67 (MQ=255)
  gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg                                                                   >  1:28079518/1‑67 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGcc                                                                 <  1:18812897/67‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc                                                                  <  1:11879352/66‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                >  1:10028175/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                >  1:26991317/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                >  1:25974159/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                >  1:30786720/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                >  1:21492/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                >  1:35708440/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                >  1:9368144/1‑68 (MQ=255)
     gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               >  1:15487858/1‑68 (MQ=255)
     atacggcctgccgtggaaatattatgaagagttaggggtacgccgttaaggtttccacggcaGGCCGt                                                               <  1:30697319‑M2/6‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGTGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:7049901/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:19609415/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:19888606/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:8508021/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:4156133/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:35363275/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:1360946/67‑1 (MQ=255)
       gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtat                                                             >  1:132050/1‑68 (MQ=255)
       acggcctgccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGtat                                                             <  1:36495414‑M2/8‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata                                                            <  1:3188618/67‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata                                                            <  1:2622107/67‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata                                                            <  1:23851583/67‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataa                                                           >  1:32209045/1‑68 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataa                                                           <  1:14742773/68‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataa                                                           >  1:12368533/1‑68 (MQ=255)
          gccTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaa                                                          <  1:28640563‑M1/65‑1 (MQ=255)
            gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaata                                                        >  1:35286252/1‑68 (MQ=255)
            gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaata                                                        >  1:32976023/1‑68 (MQ=255)
              GCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaataa                                                       <  1:1090026‑M1/67‑1 (MQ=255)
                CGTGGAAAGCATGACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCt                                                    <  1:34779538‑M1/68‑1 (MQ=255)
                CGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCt                                                    >  1:18172418‑M1/1‑68 (MQ=255)
                CGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCt                                                    <  1:27640633‑M1/68‑1 (MQ=255)
                        ccATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAg                                             >  1:7922445/1‑67 (MQ=255)
                        ccATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAg                                             >  1:6666229/1‑67 (MQ=255)
                           tAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt                                         <  1:7566764/68‑1 (MQ=255)
                             aCGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:7721283/1‑68 (MQ=255)
                              cGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGt                                      <  1:34247889/68‑1 (MQ=255)
                              cGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGt                                      <  1:29994813/68‑1 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:28962836/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:33373715/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:22624080/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:21844889/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:18525485/1‑66 (MQ=255)
                                agagttaggtgtacgccgttatggtttccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:6414266‑M2/36‑65 (MQ=255)
                                  gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtgg                                  <  1:17544670/68‑1 (MQ=255)
                                    acacCTAACTCTTCATAATATTTCCACGGCAGGTCGTATAAATAAGCTTCCGGAGCCATCGTCtggt                                 <  1:34533949/67‑1 (MQ=255)
                                    acacCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtggt                                 <  1:31171520/67‑1 (MQ=255)
                                    acacCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtggt                                 <  1:6809010/67‑1 (MQ=255)
                                      acCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGt                                      <  1:28301329/60‑1 (MQ=255)
                                       ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGaa                             >  1:31532512/1‑68 (MQ=255)
                                       ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGaa                             >  1:29381842/1‑68 (MQ=255)
                                       ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGaa                             >  1:10579175/1‑68 (MQ=255)
                                         tAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGaa                             >  1:450683/1‑66 (MQ=255)
                                          aaCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACt                          <  1:5755033/68‑1 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTg                         >  1:11166376/1‑68 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTg                         >  1:14929225/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                        >  1:20476068/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                        >  1:20340522/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                        <  1:21113625/68‑1 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                        >  1:5534678/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                        >  1:15196539/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                        >  1:14441851/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                        >  1:8843235/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       <  1:23638507/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       >  1:14022577/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       >  1:32551509/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       <  1:24689184/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       <  1:11511588/68‑1 (MQ=255)
                                             cctTCAAAATAAATCCCCCGCAGCCCCTAAAAATACGCTGCGGGAGCCATCGTCTGGTGGAAACTGGt                       <  1:4910320/67‑1 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                      >  1:16446545/1‑68 (MQ=255)
                                               ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt                     <  1:6147580/68‑1 (MQ=255)
                                               ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt                     <  1:33649945/68‑1 (MQ=255)
                                               ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt                     <  1:16080610/68‑1 (MQ=255)
                                               ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt                     <  1:26528992/68‑1 (MQ=255)
                                               ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt                     <  1:16610529/68‑1 (MQ=255)
                                                  ataataTTTCCCCGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCaa                  <  1:27237021/68‑1 (MQ=255)
                                                  ataataTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCaa                  <  1:36702086/68‑1 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                >  1:26782991/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                >  1:20749560/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                >  1:22290759/1‑67 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATAcc             >  1:17922608/1‑68 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTACGGAGCCATCGTCTGGTGGAAACTGGGATCAAATAcc             >  1:12601588/1‑68 (MQ=255)
                                                          tccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc          >  1:19180118‑M2/10‑68 (MQ=255)
                                                           ccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa         <  1:36370413‑M2/60‑1 (MQ=255)
                                                           ccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa         <  1:36034807‑M2/60‑1 (MQ=255)
                                                           ccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa         <  1:1581229‑M2/60‑1 (MQ=255)
                                                            cacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa         >  1:23039884‑M2/8‑67 (MQ=255)
                                                            cacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAc        <  1:37060312‑M2/61‑1 (MQ=255)
                                                             acggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAcc       <  1:22831360‑M2/62‑1 (MQ=255)
                                                             acggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAcc       <  1:9167950‑M2/62‑1 (MQ=255)
                                                               ggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTg     >  1:19366518‑M2/5‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCATTTACCGCCACCTGa    >  1:24046658‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa    >  1:23300050‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa    >  1:25748621‑M2/4‑68 (MQ=255)
                                                                 caGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa    <  1:25465473‑M2/65‑1 (MQ=255)
                                                                  aGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGt  >  1:30224773‑M2/2‑68 (MQ=255)
                                                                   |                                                                  
TAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGT  >  CP009273/3256478‑3256611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.