Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 246563 247227 665 153 [137] [128] 209 lafU pseudogene, lateral flagellar motor protein fragment

Only 100 of 153 total aligned reads displayed.

GCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246496‑246599
                                                                  |                                     
tcAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:13345751/66‑1 (MQ=255)
gCAGAAACCTCGGATATAAGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:27725727/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTTGTGACGACAAAAAAGTTGATTGTCAACAGAGTCa                                       <  1:7375444/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:10037437/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:18893447/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:6290305/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:31021535/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:17010709/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:34858859/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:3293848/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:14481911/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:15760029/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:19110571/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:25378088/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:14791413/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:14419172/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:11457901/67‑1 (MQ=255)
     aaCCTCTGAAATACGTTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:23435785/68‑1 (MQ=255)
     aaCCTCGGAATTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTaa                                   <  1:9288249/66‑1 (MQ=255)
     aaCCTCGGAAATACGTTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:23476546/68‑1 (MQ=255)
     aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTaa                                   <  1:34283090/66‑1 (MQ=255)
     aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:32114714/68‑1 (MQ=255)
     aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:21564143/68‑1 (MQ=255)
     aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:25647930/68‑1 (MQ=255)
     aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:25339978/68‑1 (MQ=255)
      aCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 >  1:25996282/1‑67 (MQ=255)
          cGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAg                            <  1:16922317/68‑1 (MQ=255)
          cGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAg                            <  1:37140043/68‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTTATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:672082/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:10768839/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:24771984/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:20787373/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:19192046/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:25575742/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGt                         >  1:31595761/1‑68 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGt                         <  1:29958020/67‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:10047567/1‑68 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:28663335/1‑68 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:4724606/1‑68 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        <  1:2264528/68‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:11786466/1‑68 (MQ=255)
               aTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGa                       >  1:36985116/1‑68 (MQ=255)
               aTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGa                       >  1:24188811/1‑68 (MQ=255)
                tACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaa                      <  1:2372181/68‑1 (MQ=255)
                tACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaa                      <  1:26423447/68‑1 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGTGCGTGaaa                     <  1:17535205/68‑1 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     >  1:5443206/1‑68 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:28346221/68‑1 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:18103852/68‑1 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:18847520/68‑1 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:22818272/68‑1 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:8062435/68‑1 (MQ=255)
                  cGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAg                    <  1:31928933/68‑1 (MQ=255)
                  cGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAg                    <  1:21859727/68‑1 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:12257812/1‑68 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:17669504/1‑68 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   <  1:2884878/68‑1 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   <  1:26294459/68‑1 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   <  1:35700423/68‑1 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:17019052/1‑68 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:559680/1‑68 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:3783454/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:9612361/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:11676815/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:36864303/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:13680591/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:15112851/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:17701976/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:27124437/67‑1 (MQ=255)
                          cccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             <  1:20231466/67‑1 (MQ=255)
                          cccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             <  1:7400222/67‑1 (MQ=255)
                          cccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             <  1:35886615/67‑1 (MQ=255)
                              tttgTGACGACAATAAAGGTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:3165721/65‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:8045149/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:2970381/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:1751288/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:8593860/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:35055305/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:34593259/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:13993786/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:33243004/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:13995465/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:15148506/68‑1 (MQ=255)
                               tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:9375718/1‑67 (MQ=255)
                               tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:29315587/1‑67 (MQ=255)
                               tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:12608811/1‑67 (MQ=255)
                               tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:26498649/1‑67 (MQ=255)
                               tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:1815591/1‑67 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:26719236/1‑67 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:7012442/1‑67 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:21276073/67‑1 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:11754481/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:8575386/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:35353212/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    <  1:36429460/67‑2 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:6303316/67‑4 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  >  1:25126018/1‑64 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:10692013/67‑4 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:31115298/67‑4 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:32012838/67‑4 (MQ=255)
                                                                  |                                     
GCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246496‑246599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑