| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,203,380 | G→C | 5.3% | A142P (GCA→CCA) | stfP → | e14 prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,203,380 | 0 | G | C | 5.3% | 1574.8 / 9.8 | 478 | A142P (GCA→CCA) | stfP | e14 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (296/153); new base C (2/27); total (298/180) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.76e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 479 total aligned reads displayed.
ATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTG > CP009273/1203314‑1203446 | aCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc > 1:23870684/1‑66 (MQ=255) aCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:19246346/1‑67 (MQ=255) aCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:26612206/1‑67 (MQ=255) aCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:33768725/1‑67 (MQ=255) aCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:5988694/1‑67 (MQ=255) aCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:12757249/1‑67 (MQ=255) aCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:12989319/1‑67 (MQ=255) aCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:13173453/1‑67 (MQ=255) aCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:13396051/1‑67 (MQ=255) aCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:23338566/1‑67 (MQ=255) cGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:17660831/1‑65 (MQ=255) cGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:17408200/1‑65 (MQ=255) cGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:25507837/1‑65 (MQ=255) cGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:15423055/1‑65 (MQ=255) ttATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGTGTGGAATGCCGCAAAAGCATCTGc < 1:27161141/67‑1 (MQ=255) ttATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTTGAATGCCGCAAAAGCATCTGc < 1:14996150/67‑1 (MQ=255) tATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGcc < 1:1950459/67‑1 (MQ=255) tATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGcc < 1:1844201/67‑1 (MQ=255) tATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGcc < 1:4048362/67‑1 (MQ=255) tATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGcc < 1:11144227/67‑1 (MQ=255) tGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATATGcc > 1:20437343/1‑65 (MQ=255) tGATTGGGGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCctct < 1:12359360/68‑1 (MQ=255) gATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTg > 1:36440220/1‑68 (MQ=255) aTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg > 1:11530281/1‑68 (MQ=255) aTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg > 1:8398730/1‑68 (MQ=255) aTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg > 1:26949501/1‑68 (MQ=255) aTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg > 1:31539527/1‑68 (MQ=255) aTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg > 1:24135469/1‑68 (MQ=255) aTTGGTGGTATTGAGCAATAAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg < 1:32212807/68‑1 (MQ=255) aTTGGTGGGATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg > 1:33226070/1‑68 (MQ=255) ttGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggg > 1:28956458/1‑68 (MQ=255) ttGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggg > 1:24819734/1‑68 (MQ=255) ttGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggg > 1:16574685/1‑68 (MQ=255) gtggtATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggggg > 1:18638602/1‑68 (MQ=255) tggtATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggggg > 1:11728403/1‑68 (MQ=255) tggtATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggggg > 1:28617371/1‑68 (MQ=255) ggtATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGa > 1:6472580/1‑68 (MQ=255) ggtATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGa > 1:8200996/1‑68 (MQ=255) ggtATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGa > 1:12076767/1‑68 (MQ=255) tATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATg > 1:21551152/1‑68 (MQ=255) aTTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATgg > 1:7160348/1‑68 (MQ=255) aTTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATg < 1:33529078/67‑1 (MQ=255) aTTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATg < 1:30915154/67‑1 (MQ=255) ttGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGa < 1:31269025/68‑1 (MQ=255) ttGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGa < 1:34341981/68‑1 (MQ=255) tGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGaa > 1:28529282/1‑68 (MQ=255) tGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGaa > 1:28333793/1‑68 (MQ=255) tGACCAATCAGTAATCATTCAGGGGGGGGGGCATGCCGCAAAACCATCTGCCTCTGGGGGGGATGGaa < 1:6810162/68‑1 (MQ=255) gCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAAt > 1:22817837/1‑67 (MQ=255) gCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAAt > 1:7574355/1‑67 (MQ=255) gCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAAt > 1:32996722/1‑67 (MQ=255) gCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAAt > 1:35827317/1‑67 (MQ=255) gCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAAt > 1:37000585/1‑67 (MQ=255) gCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAAt < 1:5210633/67‑1 (MQ=255) gCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGACTCTGGGGGGGATGGAAAt > 1:4504731/1‑67 (MQ=255) ccAAGCAGTAATCAATCAGTGGGCGTGGAATGCCGCAAAAGCTTCTGCCTCTGGGGGGGATGGAAAt < 1:27590110/66‑1 (MQ=255) aaTCAGTAATCATTCCGTGGGGGGGGAATGCCGCAAAAGCATCTGCCTCGGGGGGGGATGGAAATACa < 1:5532839/68‑1 (MQ=255) aaTCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACa < 1:15265020/68‑1 (MQ=255) aaTCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACa < 1:14232330/68‑1 (MQ=255) aaTCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACa > 1:32028704/1‑68 (MQ=255) tCAGTATTCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGt < 1:22239821/68‑1 (MQ=255) tCAGTACTCATTCAGGGGGGGTGCAATCCCGCAAAAGCAGCTGCCTCTGGGGGGGATGGAAATACAGt < 1:9698873/68‑1 (MQ=255) tCAGTAAGCATTCAGGGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGt < 1:20938899/68‑1 (MQ=255) cAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGtt > 1:8518173/1‑68 (MQ=255) cAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGtt > 1:19847201/1‑68 (MQ=255) aGTAATCATTCAGTGGGGGCTGAATGCCGCAAAAGCATCTGCCGCCGGGGGGGATGGAAATACAGt < 1:10027410/66‑1 (MQ=255) aaTCATTCCGTGGGGGTGGACTGCCGCAAAAGCATCTGCCCCTGGGGGGGATGGAAATACAGTTg < 1:36708875/65‑1 (MQ=255) ttCATTCCGTGGGGCTGGAATGCCGCAAAAGCAGCTGCCTCTGGGGGGGATGGAAATACAGTTGTAt < 1:24543858/66‑1 (MQ=255) aTCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGTAAATACAGTTGTAt > 1:8917967/1‑67 (MQ=255) aTCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTAt > 1:202523/1‑67 (MQ=255) aTCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTAt > 1:2183428/1‑67 (MQ=255) aTCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTAt > 1:29215503/1‑67 (MQ=255) aTCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTAt > 1:34929557/1‑67 (MQ=255) cATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTc > 1:17253780/1‑67 (MQ=255) cATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTc > 1:18807588/1‑67 (MQ=255) ttCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCg > 1:15873278/1‑68 (MQ=255) ttCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCg > 1:5325678/1‑68 (MQ=255) gTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGtt > 1:32611070/1‑67 (MQ=255) tGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTAtt > 1:26301272/1‑59 (MQ=255) tGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGc > 1:10731334/1‑68 (MQ=255) ggggggGCAATGCCGCAAAAGCATCTGCCTCTGGGGGGGCTGGAAATACAGTTGTATTCCCGGTTGc < 1:10352259/67‑1 (MQ=255) gggggTGGACTGCCGCAAAACCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGc < 1:9465344/67‑1 (MQ=255) gggggTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCg > 1:17893714/1‑68 (MQ=255) gggggTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCg > 1:4854466/1‑68 (MQ=255) ggggTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGt > 1:30490538/1‑68 (MQ=255) ggggggACTGCCGCAAACCCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGt < 1:29645688/67‑1 (MQ=255) ggggggAACGCCGCAAAAGCACCTGCCGCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGt < 1:1377658/67‑1 (MQ=255) ggggggAAAGCCGCAAAAGCCACTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGt < 1:10096560/67‑1 (MQ=255) gggTGGAATGCCGCACACCCATCAGCCTCGGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGt < 1:1820872/67‑1 (MQ=255) gggTGGAATGCCGCAAACCCAGCTGCCTCTGGGGGGGATGGAAATACAGTCGTATTCCCGGTTGCGt < 1:26243805/67‑1 (MQ=255) ggTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGttt > 1:21226841/1‑68 (MQ=255) gTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTta > 1:10951367/1‑68 (MQ=255) ggAATCCCGCAAAACCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTtaa < 1:29969208/67‑1 (MQ=255) caaTGCCCCAACAGCCCCTGCCCCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTtaat < 1:35606315/66‑1 (MQ=255) aaTGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTtaataa > 1:16415860/1‑68 (MQ=255) aTGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTaataat > 1:6314170/1‑68 (MQ=255) cGCAAACCCCTCTGCCGCTGGGGGCGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGcc < 1:1617594/67‑1 (MQ=255) aGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGtt > 1:34610992/1‑67 (MQ=255) aGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGtt > 1:2575381/1‑67 (MQ=255) gCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTg > 1:251426/1‑67 (MQ=255) | ATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTG > CP009273/1203314‑1203446 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |