| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,302,989 | T→G | 11.5% | intergenic (‑87/‑56) | clsA ← / → yciY | cardiolipin synthase 1/uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,302,989 | 0 | T | G | 11.5% | 1301.4 / 24.5 | 510 | intergenic (‑87/‑56) | clsA/yciY | cardiolipin synthase 1/uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base T (247/189); new base G (2/66); total (249/261) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.17e-19 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 526 total aligned reads displayed.
AAGCGCATTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGT > CP009273/1302922‑1303056 | aTTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg < 1:33250702/67‑1 (MQ=255) aTTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg < 1:13220130/67‑1 (MQ=255) gTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgg > 1:15564613/1‑68 (MQ=255) gTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgg > 1:8839861/1‑68 (MQ=255) gTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgg > 1:23732112/1‑68 (MQ=255) tATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggg > 1:26181231/1‑68 (MQ=255) tATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggg > 1:28546759/1‑68 (MQ=255) tGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggt < 1:31139785/68‑1 (MQ=255) gAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtg > 1:26974219/1‑68 (MQ=255) gAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtg > 1:13949350/1‑68 (MQ=255) gTTTGCGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:35880140/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGTGCAGCGTCgggggtggg > 1:18612721/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:29941647/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:21457273/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:22769020/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:32074973/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:27255116/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:25313384/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:33724899/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:3454517/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:34772393/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:17366813/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:16128770/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:9800426/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:10389294/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:8212026/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:7055336/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:15775343/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtgcg > 1:13087691/1‑66 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCTGGAAAAGCACTGGTCAGCGTCgggggtggggg < 1:15275065/68‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggggg < 1:18346644/68‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggggg < 1:21726799/68‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg < 1:25568311/66‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg < 1:21076278/66‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGGCgggggtggggg < 1:23018474/68‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGGCAGCGTCgggggtggg < 1:24671066/66‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGGCAGCGTCgggggtggg < 1:13580480/66‑1 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat > 1:3775713/1‑68 (MQ=255) cGCATAGTGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat < 1:461357/68‑1 (MQ=255) gCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtata > 1:36280708/1‑68 (MQ=255) gCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtata > 1:11644881/1‑68 (MQ=255) gCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtata > 1:20221634/1‑68 (MQ=255) gCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtata > 1:30813723/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:28233399/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:14235234/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:36914437/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTAGGGGGTGGGGGTATaa > 1:11308049/1‑68 (MQ=255) atatGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAAt > 1:26683347/1‑68 (MQ=255) tatGGATTCATCTGGCAAATATAATCGGGGTAAAAGCTCTGGGCCGCGTCGGGGGGGGGGGTATAATg < 1:24126695/68‑1 (MQ=255) tatGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGGCAGCGTCGGGGGTGGGGGTATAATg < 1:4298326/68‑1 (MQ=255) atGTATTCATCTGGCAAATAAAAACTCGGGAAACGCACTGGGCCGCGTCGGGGGGGGGCGTATAATGa < 1:2869310/68‑1 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:8557598/1‑68 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:23476045/1‑68 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:1276135/1‑68 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:16371820/1‑68 (MQ=255) ttCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt < 1:31899809/67‑1 (MQ=255) atCATCTGGCAAATAACAACCCGGGAAAAGCACTGGTCAGCGGCGGGGGTGGGGGAATAATGACCAtt < 1:19036753/67‑1 (MQ=255) tCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:26411808/1‑66 (MQ=255) tCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:35598012/1‑66 (MQ=255) cATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCt < 1:22310276/68‑1 (MQ=255) cATCTGGAAAATAAAACCGCGGTAACAGCACTGGTGATCGGCGGGGGGGGGGGTATAATGACCATTCt < 1:5517766/68‑1 (MQ=255) tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGt > 1:6587948/1‑68 (MQ=255) cTGGCAAATAACAACGCGGGAAAAGCACTGGGCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGtt < 1:10129054/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt < 1:32740538/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGGCCGCGGCGGGGGGGGGGGTATAATGACCATTCTGtt < 1:29672073/68‑1 (MQ=255) cTGCCAAATAAAACCGCGGGAAACGCACGGGTCCGCGGCGGGGGGGGGGGTATAATGACCATTCTGtt < 1:27903451/68‑1 (MQ=255) tcgCAAATAAAACCGCGGGAAAAGCACTGGGCCGCGGCGGGGGGGGGCGTATAATGACCATTCTGtt < 1:29437268/65‑1 (MQ=255) ggCAAATAAAACCGCGGGAACAGCCCGGGTCCGCGGCGGGGGGGGGCCTATAATGACCATTCTGTTAt < 1:19451241/68‑1 (MQ=255) ggCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTAt < 1:11895448/68‑1 (MQ=255) ggCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTAt < 1:17916224/68‑1 (MQ=255) ggCAAATAAAAACGCGGGAAAAGCACTGGGCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTAt < 1:32225500/68‑1 (MQ=255) cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTAtt > 1:26022031/1‑67 (MQ=255) aaaTAAAAACGCGGGAAAGGCACTGGTCAGCGTCGGGGGTGGGTGTATAATGACCATTCTGTTATTGc < 1:18901674/68‑1 (MQ=255) aaaTAAAAACGCGGGAAACGCCCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGc < 1:16692685/68‑1 (MQ=255) aaaTAAAAACGCGGGAAAAGCCCTGGGCAGCGGGGGGGGGGGGGGTATAATGACCATTCTGTTATTGc < 1:5171495/68‑1 (MQ=255) aaaTAAAAACGCGGGAAAAGCACTGGTCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGc < 1:31450953/68‑1 (MQ=255) aaaTAAAAACGCGGGAAAAGCACTGGGCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGc < 1:14823147/68‑1 (MQ=255) taaaCGCGTCAACAGCACTGGTCCGCGTCGGGGGGGGGCGTATAATGACCATTCTGTTATTGCATaga < 1:10864789/67‑1 (MQ=255) aacaCGCCGGAAAAGCCCTGGTCCGCGTCGGGGGGGGGGGAATAATGACCATTCTGTTATTGCATaga < 1:16940687/65‑1 (MQ=255) aaacCGCGGGTAAAGCACTGGTCAGCGTCGGGTGTGGGTGTATAATGACCATTCTGTTATTGCATaga < 1:15022834/68‑1 (MQ=255) aaacCGCGGGAACCGCACTGGTCAGCGTCGGGGGTGGGCGGATAATGACCATTCTGTTATTGCATaga < 1:341517/68‑1 (MQ=255) aaacCGCGGCAAAAGCACTGGGCCGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:5664394/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:5829202/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGGCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:29266475/68‑1 (MQ=255) aaaaCGCGCGAAACGCACTGGGCACCGGCGGGGGGGGGGGGATAATGACCATTCTGTTATTGCATaga < 1:16514674/68‑1 (MQ=255) accgcgGGAAAAGCACTGGGCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGagt < 1:10031856/66‑1 (MQ=255) aCGCGGGAAAAGCACTGGCCCGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagta < 1:775420/68‑1 (MQ=255) gcgGGAAAAGCACTGGGCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGagtagt < 1:12519899/68‑1 (MQ=255) aGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGGATAGAGTAGTTAACATGa > 1:22043826/1‑68 (MQ=255) cACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATATAGTAGTTAACATGaa > 1:3049070/1‑67 (MQ=255) cACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa > 1:29018731/1‑67 (MQ=255) cACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa > 1:3022285/1‑67 (MQ=255) ccTGGGCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa < 1:20764446/65‑1 (MQ=255) aCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGc > 1:7449751/1‑68 (MQ=255) aCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGc > 1:1774494/1‑68 (MQ=255) aCTGGTCAGCGTCGGGGGGGGGGGTATTATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa < 1:35150012/66‑1 (MQ=255) ggTCCGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGa < 1:9524742/68‑1 (MQ=255) tCAGCGTCGGGGGTGGGGTTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAg < 1:9180856/67‑1 (MQ=255) tCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt > 1:6167663/1‑68 (MQ=255) tCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt > 1:32458958/1‑68 (MQ=255) | AAGCGCATTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGT > CP009273/1302922‑1303056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |