| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,460,359 | A→G | 9.8% | pseudogene (711/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,460,359 | 0 | A | G | 9.8% | 1801.4 / 109.3 | 618 | pseudogene (711/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base A (395/151); new base G (5/54); total (403/215) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.28e-22 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 630 total aligned reads displayed.
GTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCA > CP009273/1460292‑1460426 | gtgCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGa < 1:21816651/66‑1 (MQ=21) gAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACATTGGCAAAACCACCGTTGACGGTAAAGa > 1:25649704/1‑68 (MQ=255) gcgtGTTATTACGGGTGATTATGCCACTGTAAACAACAAAGGCAAAACCACCGTTGACGGCAAGGAtt < 1:20808472/65‑1 (MQ=17) gCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGAt > 1:29691244/1‑67 (MQ=255) cTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGAAAAGAtt > 1:19221209/1‑67 (MQ=255) cTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGAAGGTAAAGAtt > 1:18935581/1‑67 (MQ=255) ttGTTATTACGGGTGATAATGCCACTGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGAtt < 1:8141036/66‑1 (MQ=18) ttGTTATTACGGGTGATAATGCCACTGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGAtt < 1:22353583/66‑1 (MQ=18) tGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTcc > 1:34878837/1‑67 (MQ=255) tGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCa < 1:35558360/68‑1 (MQ=255) ttattaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCAcc > 1:28101936/1‑68 (MQ=255) attaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCgg > 1:43586/1‑68 (MQ=255) attaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCgg < 1:23269470/68‑1 (MQ=255) ttaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGt < 1:15860161/68‑1 (MQ=255) ttaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGt < 1:7154973/68‑1 (MQ=255) ttaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGt < 1:27181917/68‑1 (MQ=255) ttaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGt < 1:12377623/68‑1 (MQ=255) ttaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGt < 1:25378921/68‑1 (MQ=255) ttaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGt < 1:26742861/68‑1 (MQ=255) taCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGt > 1:18551498/1‑67 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:36754167/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:24830834/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:6070522/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:24706939/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:26254192/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:17479846/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:36411372/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:14230340/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAAAGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTAc < 1:33569135/68‑1 (MQ=14) cGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAATGATTCCACCGGTACg > 1:14441223/1‑68 (MQ=255) cGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACg > 1:3945086/1‑68 (MQ=255) cGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACg > 1:23646791/1‑68 (MQ=255) cGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACg > 1:34407825/1‑68 (MQ=255) gggTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACgg < 1:14887852/68‑1 (MQ=255) ggTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGa > 1:5274042/1‑68 (MQ=255) ggTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGGAAGGATTCCAc > 1:3094572/1‑59 (MQ=17) ggTGATAATGACACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACAGGTACGGa > 1:6278924/1‑68 (MQ=255) gTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGa < 1:16081347/67‑1 (MQ=255) tGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGaaa > 1:22950149/1‑68 (MQ=255) tGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGAtt < 1:10479575/53‑1 (MQ=17) gATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAGAGATTCCACCGGTACGGaaa < 1:11766705/67‑1 (MQ=255) gATAAAGCCACAGTAAACAACAAAGGCAAAACCACCGTTGACGGCAAAGATTCCACCGGTACGGAAAt < 1:15505569/68‑1 (MQ=14) aTGCCACAGTAAACAACAATGACAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAAc > 1:32321235/1‑68 (MQ=255) aTGCCACAGAAAACAACAAAGGCAAAACCACCGTTGACGGAAATGATTCCACCGGTACGGAAATCAAc < 1:17188200/68‑1 (MQ=14) tGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACg < 1:570501/68‑1 (MQ=255) tGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACg < 1:34294914/68‑1 (MQ=255) gCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACgg < 1:35212805/68‑1 (MQ=255) gCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACgg < 1:7823949/68‑1 (MQ=255) gCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGAAAAGATTCCACCGGTACGGAAATCAACgg > 1:11904142/1‑68 (MQ=255) cacaGTAAACAACAAAGGCAAAACCACCGTTGACGGCAACGATTCCACCGGTACGGAAATCAACGGta < 1:28452346/68‑1 (MQ=11) acaGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaa > 1:26569548/1‑68 (MQ=255) aGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata > 1:8354864/1‑68 (MQ=255) gTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata > 1:3032612/1‑67 (MQ=255) ccacaacaATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata < 1:34696710/63‑1 (MQ=255) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata < 1:13448670/65‑1 (MQ=255) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata < 1:13897870/65‑1 (MQ=255) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAAc < 1:20132542/67‑1 (MQ=255) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACg < 1:4560469/68‑1 (MQ=255) acaacaATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACggg > 1:2900224/1‑68 (MQ=255) acaacaATGCCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACggg < 1:36131922/68‑1 (MQ=255) acaaTGGCAACACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACTGGaaa < 1:24578473/68‑1 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAACGATTCCACCGGTACGGAAATCAACGGAAATAACGGGaac > 1:16730079/1‑67 (MQ=14) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:11169306/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:9107364/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa < 1:6828140/68‑1 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:37060161/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:3797206/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa < 1:11476115/68‑1 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:24436161/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:32037432/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:28687644/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:17926804/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:1968540/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:25544504/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGGAATAACGGGaaa > 1:12885804/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATATCCGGAAATAACGGGaaa > 1:34021888/1‑68 (MQ=17) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATAAACGGTAATAACGGTaaa > 1:19424253/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGT‑AAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAg > 1:35989906/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGAAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGaaaa > 1:4888658/1‑68 (MQ=255) acaaTGGCAAAACCACCGTGGACGGTAAAGATTCCAACGGTACGGAAATCAACGGTAAGAACGGGaaa > 1:2224130/1‑68 (MQ=17) aaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGt > 1:10873758/1‑68 (MQ=255) aaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGt > 1:8600000/1‑68 (MQ=255) ggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGAt < 1:23787001/68‑1 (MQ=255) ggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGAt < 1:32733041/68‑1 (MQ=255) ggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGAt > 1:27795036/1‑68 (MQ=255) aaaaCCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTc < 1:21126044/67‑1 (MQ=255) aaaaCCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCa > 1:31053544/1‑68 (MQ=255) aaCCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAgg < 1:33310400/68‑1 (MQ=255) aaCCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAgg < 1:10007935/68‑1 (MQ=255) ccaccGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGAc > 1:16528589/1‑68 (MQ=255) ccaccGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGAc > 1:15026736/1‑68 (MQ=255) caccGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTTATTCAGGACg > 1:962277/1‑68 (MQ=255) cGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCg < 1:22606916/68‑1 (MQ=255) cGGTAAATATTCCACCGTTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTgg < 1:24120393/68‑1 (MQ=255) cGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTgg > 1:20470759/1‑68 (MQ=255) ggTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGa < 1:29904540/68‑1 (MQ=255) gTAAAGATTCCACCGGTACGGAAATCAACGGtaata > 1:26925400/1‑36 (MQ=255) aaaGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATg > 1:29353357/1‑67 (MQ=255) aaaGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGt < 1:21310061/68‑1 (MQ=255) aGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCa > 1:12573767/1‑68 (MQ=255) | GTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCA > CP009273/1460292‑1460426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |