| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,158 | A→C | 16.0% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,158 | 0 | A | C | 16.0% | 581.3 / 38.6 | 370 | R661R (CGA→CGC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base A (163/134); new base C (43/21); total (212/158) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.43e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 387 total aligned reads displayed.
GGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGC > CP009273/1703092‑1703222 | gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGAg > 1:30239164/1‑67 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGc > 1:5513617/1‑68 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGACGCCGCTATTGCCCgcgc > 1:6379070/1‑68 (MQ=14) caaaTCCCGACCCAGAACCCGAGGTGGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:16408133/63‑1 (MQ=11) cTAATGCCGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:1789329/65‑1 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTTTTGCCCGAGcc > 1:31052116/1‑68 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:2031835/66‑1 (MQ=255) cTAATGACGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:5204497/65‑1 (MQ=255) cTAATCCCGACGCATAACACCAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:11444076/65‑1 (MQ=11) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:14562084/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:22742199/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAg > 1:8200481/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:3050492/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:22116343/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:29474028/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:22499922/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGACGCAGCTATTGCACGAGCCAAAg > 1:33688929/1‑67 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAgc > 1:13812239/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCAGAGCAAACgc > 1:2741986/1‑68 (MQ=14) acGAACCAGAACAACAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcg < 1:36544555/67‑1 (MQ=11) cGATCCAGAACACCAGGGCGCTCCGGGAAAAGCGTACTTCTTAGAGGCTATTGCCCGAGCCAAAgcg < 1:18591959/67‑1 (MQ=255) cGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgc > 1:22917391/1‑68 (MQ=255) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCGCGCaa > 1:14292884/1‑68 (MQ=25) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaa > 1:2510286/1‑68 (MQ=35) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGAGCCAAAGCGCGCaa > 1:12066707/1‑68 (MQ=25) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAGGCCAGCaa > 1:2998267/1‑68 (MQ=11) cAGCACAACAGGTCGATCCCCGGAAAGCTGCCGTCGAAGCCGCTATGGCCCGAGCCAAAGCGCGCaaa < 1:21210090/68‑1 (MQ=11) cAGAACCACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:27858233/68‑1 (MQ=255) gAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:3350851/51‑1 (MQ=31) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCggg > 1:28554524/1‑68 (MQ=25) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:133336/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGAGAAAACggg > 1:12418181/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAACcgg > 1:10093134/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACgg > 1:27006387/1‑67 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCCAAGCGCGCAAACGGGAAc > 1:16487213/1‑68 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACGCGCGCAAACGGGAAc > 1:30921660/1‑68 (MQ=255) aGGTGGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGAGCAAACGGGAACa > 1:16039522/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa > 1:2002864/1‑67 (MQ=255) gctgATCCGCGAAAAGCAGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa < 1:32117922/65‑1 (MQ=14) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGc > 1:16757531/1‑67 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:8676457/1‑68 (MQ=255) tCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACGGGAACa < 1:50841/64‑1 (MQ=255) tCGATCCGCGCAAAGCGGCCGTCGCAGCCGCTATTGCCCGAGCCAACGCCCGCAAGCGGGACCAGCa > 1:1505920/1‑67 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGATCAGCa > 1:32430780/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCGAAAGCGCGCAAACGGGAACAGCa > 1:24366177/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCa > 1:26307216/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:31395229/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa < 1:9739431/67‑1 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGAGCAAACGGGACCAGCa > 1:5764685/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAGCGGGAACAGCa > 1:35169433/1‑67 (MQ=255) gATCCGCGCAAAGCCGCCGTCGCCGCCGCTATTGCCCGGGCGAAGGCGCGCAAGCGGGACCAGCagca > 1:24582672/1‑65 (MQ=1) gATCCGCACAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAcc > 1:7431610/1‑68 (MQ=255) tCCTCGTAAACCTGCCGTGGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:2479353/68‑1 (MQ=14) tCCGCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:3579976/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:26040494/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:10832607/68‑1 (MQ=255) tCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCg < 1:16178690/67‑1 (MQ=14) tCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:15351043/68‑1 (MQ=255) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGACCCGCAGCCGGCt > 1:20199498/1‑68 (MQ=17) cgcAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTaa < 1:9840237/68‑1 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTaa < 1:4932371/67‑1 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt > 1:16927098/1‑68 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt > 1:18324377/1‑68 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCCACCTGGAACAGGATCCGGCAACTGCgg > 1:20697034/1‑67 (MQ=11) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:25745367/1‑68 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:6235630/1‑68 (MQ=255) cctgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa < 1:27690153/65‑1 (MQ=255) tgccgTCGAAGCAGCTATAGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGc < 1:15629103/67‑1 (MQ=17) cgccgTCGAAGCAGCTATAGCCCGAGCCAAAGCGCGCAACCGGGAACAGCAACCGGCTAATGCGGAGc < 1:34244873/68‑1 (MQ=17) cGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag < 1:21037499/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaa < 1:37067588/67‑1 (MQ=255) cGAAGCAGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag < 1:9147261/68‑1 (MQ=255) gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAATCTGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:28306304/68‑1 (MQ=255) gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:19553429/68‑1 (MQ=255) gAAGCCGCTATCGCCCGAGCCAAAGCGCGCAACCGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:3787043/68‑1 (MQ=255) ccGCTATTGCCCTTGCCAAAGCGCGCAAGCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGCACAg > 1:32657240/1‑68 (MQ=11) ccGCTATTGCCCGAGCCAAAGCGCGCACACGGGAACAGCACCCGGCTAATGCGGCGCAAGAAGAACAg > 1:8346779/1‑68 (MQ=18) tgCTATGGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:33257904/66‑1 (MQ=255) cGCTATTTCCCGAGCCAAAGCGCGCAATGGGTAACATCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:11822141/67‑1 (MQ=17) cGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:25443299/67‑1 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:35339104/67‑1 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACat < 1:4528499/67‑2 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:10485981/67‑1 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:24212981/67‑1 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:17312949/67‑1 (MQ=255) cGCTATAGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:17630664/67‑1 (MQ=255) agCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:26713067/66‑1 (MQ=255) agCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:712380/66‑1 (MQ=255) aacTATTGCCCGCGCCAAAGCGCGCAAACGCGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:34745721/65‑1 (MQ=17) gCTATTGCCCGAGCCAAAGCGCGCAACCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGt < 1:656774/68‑1 (MQ=255) gCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGt < 1:12660496/68‑1 (MQ=255) aTTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGa < 1:18773178/68‑1 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGCACAGGTTGATcc > 1:29007982/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:14826576/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:10016610/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGACCCAGAAGAACACGTTGATcc > 1:23954539/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGACACCGGCTAATGCCGAGCCAGAAGAACAGGTTGATcc > 1:31857419/1‑67 (MQ=18) ccGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc < 1:23347572/68‑1 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:20522365/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTCGATCcgc < 1:23625968/68‑1 (MQ=255) | GGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGC > CP009273/1703092‑1703222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |