| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,295 | T→A | 10.9% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,295 | 0 | T | A | 10.9% | 1035.4 / 62.5 | 387 | V707E (GTA→GAA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base T (181/160); new base A (33/12); total (215/172) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.07e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 400 total aligned reads displayed.
GCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCA > CP009273/1703228‑1703360 | gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:9028136/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:17442379/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:32471768/1‑68 (MQ=255) cTGCCGTCGAAGCCGCTATCGCACGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:25836355/68‑1 (MQ=14) tGCCGTGGAAGCTGCTATAGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTAc < 1:1560510/68‑1 (MQ=14) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:1131379/66‑1 (MQ=255) cgCCGTCGCAGCGTCTATTGCACGCGCGAAAGCCCGCAATCTTGAAACGCAACAGGCTAATGCGGTa < 1:20362346/66‑1 (MQ=12) gCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAcc > 1:12309564/1‑68 (MQ=255) cGTCGAAGCTGCTATAGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:7436326/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:32632300/67‑1 (MQ=255) tCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaa > 1:25037558/1‑68 (MQ=255) tCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaa > 1:13828772/1‑68 (MQ=255) cGAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaag < 1:14673558/68‑1 (MQ=255) cGAAGCCGCTATCGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaa < 1:1494809/67‑1 (MQ=11) gAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:26131973/68‑1 (MQ=255) aaGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga > 1:19150508/1‑67 (MQ=255) aGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAc > 1:24205781/1‑68 (MQ=255) cGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg > 1:33744063/1‑68 (MQ=255) cGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg > 1:24334337/1‑68 (MQ=255) cGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg > 1:8277597/1‑68 (MQ=255) ttttATTGCACGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:27891074/64‑1 (MQ=11) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:3473322/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:1289761/67‑1 (MQ=255) agCTATTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:23799873/66‑1 (MQ=11) gCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:17184218/57‑1 (MQ=255) cTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:10062386/65‑1 (MQ=255) aTTGCACGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGa < 1:33522089/68‑1 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:16370831/1‑67 (MQ=255) gcccgcgCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc < 1:31850143/65‑1 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:22616284/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:30180917/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:18050033/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:7709849/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:9639808/1‑67 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGACCAGCAACAGGCGAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:4138233/1‑68 (MQ=17) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:3143326/1‑68 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:26796618/1‑68 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:1534957/1‑68 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:21402344/1‑68 (MQ=255) gcgcCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCgcgc > 1:16053716/1‑68 (MQ=255) ccAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa > 1:30973813/1‑68 (MQ=255) ccAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa > 1:32126129/1‑68 (MQ=255) ccAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa > 1:25130048/1‑68 (MQ=255) aaaGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGc < 1:19406520/68‑1 (MQ=255) aaaGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGc < 1:6242070/68‑1 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCCGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:25498474/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAGGAACAGGTTGATCCGCGCAAAGCGGc > 1:37064473/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:35979773/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:8670782/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:8071996/1‑68 (MQ=255) aaGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGc < 1:35524021/68‑1 (MQ=255) aaGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGc < 1:13492318/68‑1 (MQ=255) tGGAACTGCAACAGCCTAATCCGTTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:28826930/68‑1 (MQ=18) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:5440995/38‑1 (MQ=40) tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:33954229/68‑1 (MQ=14) aaCAGCAACAGGCTATTGCGGTACCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:12701013/67‑1 (MQ=18) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:7031741/67‑1 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:29339596/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:23346474/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:36687868/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGCAGCGGCTa > 1:364126/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:20461267/1‑68 (MQ=17) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTGGCAGCGGCTa > 1:27138199/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGCCGCGGCTa > 1:21838382/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTGGATCCGCGCAAAGCGGCAGTGGCCGCGGCTa > 1:30435350/1‑68 (MQ=14) cAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGCAGCGGCTAt > 1:28530659/1‑68 (MQ=11) aGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAtt > 1:18415782/1‑68 (MQ=255) aGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAtt > 1:35397856/1‑68 (MQ=255) cAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGCCGCGGCTATTg > 1:1442718/1‑67 (MQ=11) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:34303310/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc > 1:18801480/1‑67 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc > 1:27643573/1‑67 (MQ=255) aaCAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTg < 1:6563467/66‑1 (MQ=255) aGGCTAATGCGGTACCATAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:11448151/1‑68 (MQ=255) aGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:4553919/1‑68 (MQ=255) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:24526521/63‑1 (MQ=255) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:28276174/1‑66 (MQ=255) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:25953467/1‑66 (MQ=255) cTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGCAGCGGCTATTGCCCgcgca > 1:1670425/1‑67 (MQ=14) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTGGCCGCGGCTATTGc > 1:14325003/1‑61 (MQ=14) ttcGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:4306611/66‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCggg < 1:11678111/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:11839285/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:11142609/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:10438785/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:35100818/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:30697465/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:19899485/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:21019938/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:24006265/68‑1 (MQ=255) tGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:29159222/68‑1 (MQ=255) tGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:2170250/68‑1 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:34564142/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:5666307/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:34138749/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:3321001/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:17822067/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:26250067/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:9367734/1‑67 (MQ=255) ggTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCa < 1:4796816/68‑1 (MQ=255) | GCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCA > CP009273/1703228‑1703360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |