| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,530,282 | G→A | 25.2% | I105I (ATC→ATT) | pdxK ← | pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,530,282 | 0 | G | A | 25.2% | 1255.9 / inf | 694 | I105I (ATC→ATT) | pdxK | pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| Reads supporting (aligned to +/- strand): ref base G (321/198); new base A (109/66); total (430/264) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.09e-01 | |||||||||||
Only 100 of 702 total aligned reads displayed.
TCACCGGATCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGTTGGCGCAGCGCATCAC > CP009273/2530215‑2530349 | tCACCGGATCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAgg < 1:16290882/68‑1 (MQ=255) ccGGATCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGAtt > 1:26646984/1‑68 (MQ=255) aTCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGa > 1:17962493/1‑68 (MQ=255) aTCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGa > 1:27648874/1‑68 (MQ=255) aTCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGa > 1:24496789/1‑68 (MQ=255) aTCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGa > 1:19737113/1‑68 (MQ=255) aTCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGa > 1:3740793/1‑68 (MQ=255) aTCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGa > 1:15749305/1‑68 (MQ=255) aTCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGa > 1:14131204/1‑68 (MQ=255) aTCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGa > 1:10715219/1‑68 (MQ=255) aTCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGa > 1:10128902/1‑68 (MQ=255) aTCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGa > 1:8141199/1‑68 (MQ=255) ccATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGc > 1:11842651/1‑68 (MQ=255) cATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCg > 1:33751749/1‑68 (MQ=255) cATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCg > 1:5281306/1‑68 (MQ=255) cATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCg > 1:11445522/1‑68 (MQ=255) tGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGAt < 1:16924151/68‑1 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGcc > 1:23375178/1‑68 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGcc > 1:31211875/1‑68 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGcc > 1:30661723/1‑68 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGcc > 1:29936978/1‑68 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGcc > 1:18726923/1‑68 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGcc > 1:28206560/1‑68 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGcc > 1:4002895/1‑68 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGcc > 1:17521326/1‑68 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGcc > 1:6583033/1‑68 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGcc > 1:10464589/1‑68 (MQ=255) tCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGcc > 1:33373759/1‑68 (MQ=255) aaTAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGt < 1:25628367/68‑1 (MQ=255) aTAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGtt < 1:29249578/68‑1 (MQ=255) aTAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGtt < 1:35248677/68‑1 (MQ=255) aTAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGtt < 1:13742349/68‑1 (MQ=255) aTAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGt > 1:17104117/1‑67 (MQ=255) aTAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGt > 1:201608/1‑67 (MQ=255) aTAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGtt < 1:2480887/68‑1 (MQ=255) aTAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGtt < 1:12486490/68‑1 (MQ=255) aTAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGt > 1:27974467/1‑67 (MQ=255) aTAGGGCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGtt < 1:22992182/68‑1 (MQ=255) tAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGAt < 1:7445749/48‑1 (MQ=255) tAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGtt > 1:898840/1‑67 (MQ=255) atgTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTcc < 1:35646905/66‑1 (MQ=255) aGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTcc < 1:10960775/68‑1 (MQ=255) aGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTcc < 1:7222744/68‑1 (MQ=255) aGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTcc < 1:935299/68‑1 (MQ=255) aGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTc > 1:4555297/1‑67 (MQ=255) aGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTc > 1:26305030/1‑67 (MQ=255) aGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTcc < 1:36587097/68‑1 (MQ=255) aGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTcc < 1:9626434/68‑1 (MQ=255) aGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTc > 1:32712008/1‑67 (MQ=255) aGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTc > 1:34299291/1‑67 (MQ=255) ggTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTccc > 1:26980133/1‑68 (MQ=255) ggTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTccc > 1:25340246/1‑68 (MQ=255) ggTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTccc > 1:18263779/1‑68 (MQ=255) ggTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTccc > 1:12704792/1‑68 (MQ=255) ggTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTccc > 1:7856859/1‑68 (MQ=255) tCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCat > 1:18484385/1‑68 (MQ=255) tCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCa < 1:14526947/67‑1 (MQ=255) tCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTCCCat > 1:31599917/1‑68 (MQ=255) tCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTCCCa < 1:33061662/67‑1 (MQ=255) tCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTCCCa < 1:21850810/67‑1 (MQ=255) cAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCat < 1:9713103/67‑1 (MQ=255) aTGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAg > 1:36255092/1‑67 (MQ=255) aTGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAg > 1:20675432/1‑67 (MQ=255) aTGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAg > 1:30360016/1‑67 (MQ=255) aTGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTCCCATATAg > 1:24060992/1‑67 (MQ=255) aTGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTCCCATATAg > 1:26029838/1‑67 (MQ=255) aTGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTCCCATATAg < 1:8549500/67‑1 (MQ=255) tGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCTATGCCGTTCCCATATAGc > 1:17772947/1‑67 (MQ=255) tGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGcc < 1:4330718/68‑1 (MQ=255) tGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGcc < 1:23813367/68‑1 (MQ=255) tGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGc < 1:20087442/67‑1 (MQ=255) tCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTCCCATATAGCCCg < 1:31928835/67‑1 (MQ=255) cTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCtgtg < 1:35969828/68‑1 (MQ=255) cTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTg > 1:6045350/1‑68 (MQ=255) cTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTg < 1:6317711/68‑1 (MQ=255) cTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTg < 1:22188126/68‑1 (MQ=255) cGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTAc > 1:36823094/1‑68 (MQ=255) cGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTAc > 1:20858847/1‑68 (MQ=255) cGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTAc > 1:21367377/1‑68 (MQ=255) cGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTAc > 1:4968603/1‑68 (MQ=255) cGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTAc > 1:5496776/1‑68 (MQ=255) cGTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTAc > 1:6984151/1‑68 (MQ=255) gTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACa > 1:1530725/1‑68 (MQ=255) gTAGCGCAGTCAGCCACTCGGCAAGAATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACa < 1:25055947/68‑1 (MQ=255) gcAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCa < 1:16649294/66‑1 (MQ=255) gcAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACg > 1:32278551/1‑68 (MQ=255) gcAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACg > 1:2724195/1‑68 (MQ=255) aGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGaa > 1:28699293/1‑68 (MQ=255) tCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGt > 1:17249603/1‑68 (MQ=255) cAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAg < 1:34074973/66‑1 (MQ=255) cAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAg < 1:8288861/66‑1 (MQ=255) cAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGtt > 1:13167942/1‑68 (MQ=255) cACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGTTGgc < 1:32599304/67‑1 (MQ=255) aCTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGTTGgcgc > 1:15011461/1‑68 (MQ=255) aCTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGTTGgcgc > 1:34985315/1‑68 (MQ=255) cgccAAGAATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGTTGgcgcagc < 1:8900024/65‑1 (MQ=255) cGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGTTGgcgcagc < 1:19213413/68‑1 (MQ=255) cGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGTTGgcgcagc < 1:12176668/68‑1 (MQ=255) cGGCAAGAATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGTTGgcgcagc < 1:10001077/68‑1 (MQ=255) cAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGTTGgcgcagcgc < 1:15985842/67‑1 (MQ=255) | TCACCGGATCGACCATGATCAATAGGTCAGGATGGTCTTTGCGTAGCGCAGTCAGCCACTCGGCAAGGATTTTGATTTGCGATGCCGTTCCCATATAGCCCGTGGTTACAGCACGAAGTTGGCGCAGCGCATCAC > CP009273/2530215‑2530349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |