| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,762,925 | T→G | 5.2% | intergenic (+80/‑137) | yfjQ → / → yfjR | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,762,925 | 0 | T | G | 5.2% | 1486.3 / 8.5 | 445 | intergenic (+80/‑137) | yfjQ/yfjR | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (51/365); new base G (26/3); total (77/368) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.88e-19 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 452 total aligned reads displayed.
GCCACGTTGTTAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCAT > CP009273/2762858‑2762991 | gCCACGTTGTTAATATCTGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGt < 1:26351811/68‑1 (MQ=255) cGTTGTTAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTtata < 1:30737990/68‑1 (MQ=255) cGTTGTTAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAAGGCCCCGGGtagg > 1:8988180/1‑66 (MQ=21) gttgttAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATGCGCCGGGTGTAg > 1:30381477/1‑68 (MQ=21) gttgttAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTtata > 1:3751548/1‑67 (MQ=255) gttgttAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGGTagag > 1:6231026/1‑68 (MQ=255) tgttAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGc < 1:25558780/67‑1 (MQ=255) tgttAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGc < 1:11524434/67‑1 (MQ=255) tgttAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCt < 1:2576860/68‑1 (MQ=255) tgttAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCt < 1:3165333/68‑1 (MQ=255) tgttAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCt < 1:8214702/68‑1 (MQ=255) atCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAc > 1:11351114/1‑67 (MQ=255) tCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGGTATAGCTTTTAAcc > 1:2658429/1‑67 (MQ=255) cGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAcccc < 1:7584565/68‑1 (MQ=255) ggACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAccccc < 1:31181722/68‑1 (MQ=255) ggACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAccccc < 1:17198991/68‑1 (MQ=255) ggACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAccccc < 1:25313468/68‑1 (MQ=255) acacCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCg < 1:28955208/67‑1 (MQ=255) acacCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCg < 1:6488971/67‑1 (MQ=255) caccTGTCCGCATCGCTATGTGCTCGTGTGCCTCTATCCCCCGGTTATAGCTTTTAACCCCCGTTACa < 1:28726318/68‑1 (MQ=255) caccTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACa < 1:10466611/68‑1 (MQ=255) caccTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACa < 1:22555766/68‑1 (MQ=255) ccTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACa > 1:9811552/1‑66 (MQ=255) aTCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACa > 1:13767164/1‑57 (MQ=255) tgtgCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAAt < 1:21195154/68‑1 (MQ=255) gCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATaa < 1:8078405/67‑1 (MQ=255) gCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATaa < 1:36992906/67‑1 (MQ=255) gCTCGTGTGCCTCAATCCCCCGGGTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATaa < 1:28565269/67‑1 (MQ=255) cTCGTGTGCCTCAATCCCCCGGTTAGAGCTTTTAGCCGCCGGTACTGCTGGGTTTTGGAGAAATaaca > 1:34433013/1‑66 (MQ=255) cTCGTGTGCCTCAATCCCCCGGGTAGCGCGTTTGACGGCCGTTGCCGCGGGCTGTTGCagaaagaaga > 1:13262401/1‑66 (MQ=255) tCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATaaaa < 1:19676177/67‑1 (MQ=255) cGTGTGCCTCAATCCCCCGGTTATAGCTTTTTGCGGCGGTTACATGTGGGGTTTGCAGATATaaaaaa > 1:18845293/1‑68 (MQ=255) cGTGTGCCTCAATCCCCCGGGTATAGCTTTTAACCCGCGTTGCATGTGGGGTTTGCTGATATaaaaaa > 1:32976709/1‑68 (MQ=255) tgtgCCTCAATCCCCCGGTTATGGCGTTTGTGCCCCGTTCGGTCTGGCGGTTGGAGAAGTaataaagt > 1:3502652/1‑66 (MQ=255) tgtgCCTCAATCCCCCGGTTATAGCTTTTACCCGCCGGTACATCTGGCGGTTGCTGAATTTAataata > 1:19198898/1‑68 (MQ=255) tgtgCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGGTAGATCTGGGTTTTGCAGAAATAAAAAATa > 1:30186702/1‑68 (MQ=38) tgtgCCTCAATCCCCCGGGTATAGCTTTTAAGCCCCGTTACGTCTGGGGTTTGCTGAATTAAAAAATa > 1:27720158/1‑68 (MQ=255) aaTCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGc < 1:24045629/68‑1 (MQ=255) aTCCCCCGGGTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCg > 1:24588755/1‑68 (MQ=255) ccccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTg < 1:32627086/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:7364127/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:29680407/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:14294785/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:1418013/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:5908276/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:16410024/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:12478378/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:17333726/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:17793045/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:24914768/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:108436/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:7883487/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:32178086/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:22242927/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:21926236/68‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCGTTTGCAGAAATAAAAAATAGTTTCTGCGTTGt < 1:28156794/68‑1 (MQ=255) cctgTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:21742497/65‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTTGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:4807062/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGGTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:10082519/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:19519711/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:20107633/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:36607587/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:4091984/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:439392/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:3516559/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:4608941/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:18516395/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:1314774/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:34594514/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:20333464/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:8378349/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:8800930/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:34007169/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:27397157/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:22006596/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:17971594/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:23051355/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:23288228/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:23439587/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:24270002/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:24801769/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:25156905/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:16744744/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:16000705/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:27097888/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:33546851/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:28331512/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:21547911/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:15724811/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:15160204/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:29113268/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:29401149/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:14853311/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:31388775/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:20831055/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:31969389/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:33413820/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTCGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:36030296/68‑1 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACAGCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTc < 1:5430207/68‑1 (MQ=255) ggTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCa > 1:10598989/1‑68 (MQ=255) | GCCACGTTGTTAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCAT > CP009273/2762858‑2762991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |