| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,063,843 | A→C | 13.2% | intergenic (‑82/+32) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,063,843 | 0 | A | C | 13.2% | 961.7 / 23.1 | 350 | intergenic (‑82/+32) | yihR/yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| Reads supporting (aligned to +/- strand): ref base A (252/31); new base C (2/43); total (254/96) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.72e-31 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 415 total aligned reads displayed.
GGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCA > CP009273/4063776‑4063908 | gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGagag > 1:3737764/1‑68 (MQ=255) tGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAggg > 1:33802981/1‑68 (MQ=255) gTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa > 1:29646028/1‑68 (MQ=255) gTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa > 1:27014571/1‑68 (MQ=255) tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa > 1:17220883/1‑67 (MQ=255) cccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGc > 1:2050552/1‑68 (MQ=255) ccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGc > 1:28468162/1‑67 (MQ=255) aaaacCTCCCCCGGCCGGCCCCCTCGCCCCTTTGGGGAGCGGGTTCGGCCGCGGGGAAAACCCGCAcc < 1:14676561/68‑1 (MQ=12) aaaaaCTGCACCGGCCGGTCCCCTCGCCGCTTTGGGTAGAGGGTTTGGGAGTGGGGAAAACCCGCAcc < 1:17697720/68‑1 (MQ=21) aaaaCTCCCCCGCACGGCCCCCCCCCCCCTTTGGGGAGCGGGTTCGGGAGCGGGGAAAACCCGCAccc < 1:19198507/68‑1 (MQ=16) aaaaCTCCACCGGACGGTCCCCTCGCCCCTTTGGGGAGTGGGTTTGGGAGAGGGGAAAACCCGCAccc < 1:6800746/68‑1 (MQ=21) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAt > 1:10130744/1‑68 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAt > 1:21713237/1‑68 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAt > 1:31587862/1‑68 (MQ=255) aCTCCACCGGCGGGCCCCCTCCCCCCTTTGGGGTGTGGTTTTGGGCGTGGGGAAAACCCGCACCCTAt < 1:11349691/68‑1 (MQ=12) cTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAtt > 1:28963924/1‑68 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCa > 1:32825846/1‑68 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCa > 1:7089735/1‑68 (MQ=255) ccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTATCAg > 1:29997083/1‑68 (MQ=255) aCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCCCCCTATTTTCAGATCa > 1:23310508/1‑68 (MQ=255) aCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCa > 1:36376002/1‑68 (MQ=255) aCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCa > 1:29232762/1‑68 (MQ=255) aCGGTCCCCTCGCCCCGTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCCCCCTTTTTTAAGATCa > 1:23511327/1‑68 (MQ=18) cGGGCCCCGCGCCCCTTGGGTTTGGGGTTTTGGTTGCGGGCAAAACCCGCACCCTATTTTCAGATCAg < 1:24804726/68‑1 (MQ=255) cccccTCCCCCGTTTGGGGATTGGGTTAGGTTGTGGGGAAAACCCGCACCCTATTTTCAGATCAGtt < 1:5364922/66‑1 (MQ=21) ccccTCGCCCCTTTGGGGAGAGGGTTAGGGAGCGGGGAACACCCGCACCCTATTTTCAGATCAGTTAt > 1:2203233/1‑68 (MQ=255) ccccTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTAt > 1:18726468/1‑68 (MQ=255) cTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTc > 1:34541001/1‑68 (MQ=255) cGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:27748810/1‑68 (MQ=255) cGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:31384723/1‑68 (MQ=255) cGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:30448816/1‑68 (MQ=255) cGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:34869452/1‑68 (MQ=255) cGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:35696404/1‑68 (MQ=255) cGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:3888930/1‑68 (MQ=255) cccccTTGGGGGAGTGGGTTCGGGAGCGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:24707023/67‑1 (MQ=255) ccccTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAt > 1:7779598/1‑68 (MQ=255) cccTTTGGGGAGAGGGTTAGGGACAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAtt < 1:6453390/68‑1 (MQ=255) ttGGGGTGTGGGTTTGGGCGCGGGCAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAat < 1:25574459/67‑1 (MQ=255) ttGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAata > 1:36451628/1‑68 (MQ=255) tGGGGTGTGGTTTGGGGCGCGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAatat < 1:20808893/68‑1 (MQ=255) tGGGGAGAGGGTTAGGGAGCGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAatat < 1:23781719/68‑1 (MQ=255) ggggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAatat > 1:9622732/1‑67 (MQ=255) ggggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAatat > 1:25228845/1‑67 (MQ=255) ggggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAatat > 1:13084600/1‑67 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:24171304/1‑68 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:12006855/1‑68 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:12426130/1‑68 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:5892427/1‑68 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca < 1:12883438/68‑1 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:36725448/1‑68 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:20993939/1‑68 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:14920480/1‑68 (MQ=255) cgagaGGGTTACGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:20083865/2‑68 (MQ=255) gagtGGGTTTGGGAGCGGGCAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca < 1:35992392/67‑1 (MQ=255) gagaGGGTTAGGGAGCGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca < 1:1550461/67‑1 (MQ=255) gagaGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:30218977/1‑67 (MQ=255) agagGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:7264133/1‑68 (MQ=255) agagGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:32673978/1‑68 (MQ=255) agagGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:16060978/1‑68 (MQ=255) agagGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:4538876/1‑68 (MQ=255) gggTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagcag > 1:14068064/1‑67 (MQ=255) aGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGAccc > 1:34273713/1‑66 (MQ=255) gggAGAGGGGAAAACCCGCACCCTATTTTCAGATCa < 1:10711052/36‑1 (MQ=255) gggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGAccc > 1:4735043/1‑65 (MQ=255) ggggagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:18044425/4‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCCGCAGACCctct > 1:8752868/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:24962414/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:26055493/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:26670469/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:23121105/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:2272262/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:2744146/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:13242000/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:32177642/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:22394388/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:21456126/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:14424953/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:11088272/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:19497762/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:7617057/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:18444416/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:10901793/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:8494707/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:34051240/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:17480300/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:24519563/1‑67 (MQ=255) gagaGGGGAAAACCCGCCCCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGCCCCGCTGc > 1:33682356/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:36831096/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:9267820/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:26359712/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:5605321/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:35166534/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:15867951/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:31021357/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:32405216/1‑68 (MQ=255) agagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:5217950/1‑68 (MQ=255) agagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:36197234/1‑68 (MQ=255) agagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:1965753/1‑68 (MQ=255) agagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:33211065/1‑68 (MQ=255) agagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:16818670/1‑68 (MQ=255) | GGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCA > CP009273/4063776‑4063908 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |