| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 417,885 | T→G | 13.0% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 417,885 | 0 | T | G | 13.0% | 1420.4 / 47.1 | 484 | intergenic (+70/‑89) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| Reads supporting (aligned to +/- strand): ref base T (27/388); new base G (66/3); total (93/391) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 0.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 540 total aligned reads displayed.
CTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCAGAT > CP009273/417818‑417952 | cTTGCGTTCTGTAAGCTGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGt < 1:5698853/68‑1 (MQ=255)cTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGt < 1:8406954/68‑1 (MQ=255)cTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGt < 1:5995367/68‑1 (MQ=255) tGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGGGCCCGgcc > 1:35587009/1‑68 (MQ=255) cGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGgcct > 1:29642964/1‑67 (MQ=255) gTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGgccgcc > 1:33124371/1‑68 (MQ=255) gTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTACGAAAGTTATCCGCGCCCGtgctcg > 1:20829769/1‑67 (MQ=255) cTGTAAGCCGGTTCAGGATGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:3101133/68‑1 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:24861116/68‑1 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:24027232/68‑1 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:3870815/68‑1 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:19489137/68‑1 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:18408991/68‑1 (MQ=255) tGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:24421953/67‑1 (MQ=255) tGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTccc < 1:20677224/68‑1 (MQ=255) gTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTcccc < 1:33457276/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTTATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:4878997/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTccccc < 1:18757929/67‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:6843694/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:32542848/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:35015235/68‑1 (MQ=255) gCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCGGGCCCaaa > 1:25037276/1‑68 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCTGCTATTCCGAAAGTTATCCGCCCCCGTCCGCCGCCGCCCAat > 1:10968146/1‑68 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGGCGCCGGCCGCGGCCCCCacag > 1:24555552/1‑65 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCGGCGCCCCCAAat > 1:34882834/1‑68 (MQ=255) cGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAat < 1:23094443/67‑1 (MQ=255) tCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATcc < 1:6326683/67‑1 (MQ=255) tCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCt < 1:27270774/68‑1 (MQ=255) aggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCa < 1:33379557/66‑1 (MQ=255) aggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCa < 1:21073981/66‑1 (MQ=255) aggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCTGCCCCAAATATCCTTCa > 1:26718045/1‑66 (MQ=255) aggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCGCCCCCAAATATCCTTCa > 1:22828359/1‑66 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:17970181/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:4346653/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:37127323/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:16186998/67‑1 (MQ=255) aaaTCCTGATCCGGCTATTCCGAAAGTTATCCGGCCCCGGCCTCCACGCCCACATATCATTAAgatga > 1:20448719/1‑68 (MQ=255) aaTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatgat < 1:15310345/68‑1 (MQ=255) aaTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatgat < 1:1402443/68‑1 (MQ=255) aTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGatgatg < 1:33004181/68‑1 (MQ=255) aTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCTCCCCCAAACAGCCATCAGatgttg > 1:25552827/1‑68 (MQ=255) ccTGATCCGGCTATTCCGAAAGTTATGCGCCCCCGGCCGCCGGCCCCAAATATCCGTCAGATGATGAg > 1:3584551/1‑68 (MQ=255) tGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTg < 1:26018243/68‑1 (MQ=255) gATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGtat < 1:8918468/68‑3 (MQ=255) gATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCGCCCGCCCACAAAGATCCTTCACATGATGAGTgt > 1:10579211/1‑67 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGGCCCCGGGCGCCGCCCCAAAATATCATTCAGATGTTGAGTGAt > 1:32045127/1‑67 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCGCCCGGGCGCCTCCCCCCAAAATACTTCAGATGATGAGTgtt > 1:10291612/1‑65 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:31451160/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:5286922/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:1015233/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:26500198/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:269928/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:13368441/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:12616033/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:16700316/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:17529373/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:19258269/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:20063381/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATc < 1:26215408/68‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGGGAt > 1:21345116/1‑67 (MQ=255) ccGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCGCCCCCAAATATCATTCAGATGATGAGTGAt > 1:10008648/1‑66 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:1980310/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:4717903/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:11524332/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:7073107/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:34395432/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:22100969/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:9612660/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:28839723/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:2921330/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:30304430/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:3059902/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:8708018/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:31764772/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGGCCGCCTCCCCCCAAAATCCTTCAGATGTTGTGTGATCCTgga > 1:36214005/1‑66 (MQ=255) tCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAg < 1:35455572/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:23657992/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:7565019/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:7741198/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:12065972/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:28439023/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:5445727/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:12903187/68‑1 (MQ=255) cGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGc < 1:34132318/68‑1 (MQ=255) cGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGc < 1:17007934/68‑1 (MQ=255) cGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGc < 1:4044740/68‑1 (MQ=255) cGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGc < 1:11251173/68‑1 (MQ=255) cGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGc < 1:21792159/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:9718143/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:17233664/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:2397856/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:2787121/68‑1 (MQ=255) aGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATg < 1:35304816/68‑1 (MQ=255) aGTTATCCGCCCCCGTCCGCCTCCCCCAAATATACTTCAGATGATTAGTGATGAGGGATTAGGCTATg > 1:14233130/1‑68 (MQ=255) aGTTATCCGCCCCCGGCCGCCTCCCCCCAAAATACTTCAGATGATGAGTGATCCTGCATTAGGCTATg > 1:14834255/1‑68 (MQ=255) ttATCCGCCCCCGTCCTCCTCCCCCCAAAATACTTCAGAGGATGCGTGATTCTGCCTTAGGGTATGGc > 1:34045654/1‑68 (MQ=255) tATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATgg < 1:28207775/66‑1 (MQ=255) ccGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAgg < 1:2985859/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:16520393/68‑1 (MQ=255) gTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCAGa < 1:22476898/68‑1 (MQ=255) | CTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCAGAT > CP009273/417818‑417952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |