New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 284691	429 (3.230)	8 (0.060)	7/288	2.3	1.8%	coding (1491/1968 nt)	yagF	CP4‑6 prophage; D‑xylonate dehydratase
	?	NC_000913	= 284723	456 (3.530)					coding (1523/1968 nt)	yagF	CP4‑6 prophage; D‑xylonate dehydratase
Rejected: Frequency below/above cutoff threshold.

AAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/284540‑284691 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCACC  <  NC_000913/284723‑284577                                                                                                                                                                                                                                                                                                             AAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATC                                                                                                                                                        >  2:705448/1‑149 AAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATC                                                                                                                                                        <  1:284092/149‑1   GGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCAT                                                                                                                                                      <  1:1968670/149‑1   GGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCAT                                                                                                                                                      <  1:1968966/149‑1   GGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCAGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCAT                                                                                                                                                      <  2:1498861/149‑1    GTTCTGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATG                                                                                                                                                     <  2:1320788/149‑1    GTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATG                                                                                                                                                     <  2:1706046/149‑1                                  CGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGCCGGACGGCCCGCCGCCGATCACC                                                                                                                       <  2:678103/149‑1                                   GTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGCCGGACGGCCCGCCGCCGATCACCA                                                                                                                      <  2:237504/149‑1                                      GGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCA                                                                                                                   <  1:1112038/149‑1                                      GGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCA                                                                                                                   <  1:584361/149‑1                                          GTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGAT                                                                                                               <  1:1815262/149‑1                                           TGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATA                                                                                                              <  1:285705/149‑1                                            GGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATAT                                                                                                             <  2:1156108/149‑1                                                                ACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCC                                                                                         <  2:1327241/149‑1                                                                                                                                                     CATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCA    >  2:557934/1‑149                                                                                                                                                     CATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCA    >  2:557871/1‑149                                                                                                                                                     CATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCA    <  1:2093793/149‑1                                                                                                                                                     CATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCA    <  2:2074733/149‑1                                                                                                                                                     CATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCA    <  2:1467970/149‑1                                                                                                                                                      ATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCAC   >  2:837289/1‑149                                                                                                                                                      ATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCAC   >  2:951285/1‑149                                                                                                                                                      ATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCAC   >  2:1487207/1‑149                                                                                                                                                      ATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCAC   <  2:1077317/149‑1                                                                                                                                                      ATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCAC   <  1:446596/149‑1                                                                                                                                                      ATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCAC   >  1:227689/1‑149                                                                                                                                                      ATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCAC   >  1:227616/1‑149                                                                                                                                                       TGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCACC  >  2:1467223/1‑149                                                                                                                                                       TGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCACC  >  1:751945/1‑149                                                                                                                                                       TGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCACC  >  1:424801/1‑149                                                                                                                                                       TGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCACC  >  1:1513589/1‑149                                                                                                                                                                                                                                                                                                             AAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/284540‑284691 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGTGGTATACGCCATCTTCGCCCACCACC  <  NC_000913/284723‑284577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.