| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2822705 = | 139 (0.720) | 23 (0.150) +GATTTGAGTCAGCTAGGAGGTGACTGAG |
8/240 | 1.6 | 12.4% | intergenic (‑66/+3) | recX/recA | RecA inhibitor RecX/DNA recombination/repair protein RecA |
| ? | NC_000913 | = 4171809 | 264 (1.380) | intergenic (+53/‑248) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2822788‑2822705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGG < NC_000913/4171809‑4171663 |||||||||||||||||||||||||||| CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAG < 1:2066781/149‑1CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAG < 1:2016676/149‑1CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAG < 2:1852340/149‑1 TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGC < 2:832379/149‑1 TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGC < 1:2010868/149‑1 TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGC < 2:2500185/149‑1 TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGC < 2:2423439/149‑1 TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGC < 2:2399267/149‑1 CTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCT < 2:1931845/149‑1 GAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCTCAGTCTTTCGACTGAGCCTTT < 2:400402/149‑1 GAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT < 1:2692417/149‑1 GAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT < 1:2692637/149‑1 GAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT < 1:566920/149‑1 GAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT < 2:1557727/149‑1 GAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT < 2:1557743/149‑1 GCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCG < 2:1328608/149‑1 GCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCG < 2:182754/149‑1 GCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCG < 1:1853627/149‑1 CAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGT < 2:1680414/149‑1 CCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTA < 1:2579715/149‑1 CCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTA < 1:2579653/149‑1 GAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATT < 1:1182205/149‑1 CGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCtc < 1:152641/149‑3 gGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCCCACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGG > 1:2396211/2‑149 |||||||||||||||||||||||||||| CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2822788‑2822705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGG < NC_000913/4171809‑4171663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |