| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2104974 | 53 (1.080) | 15 (0.370) | 13/210 | 2.6 | 22.8% | intergenic (‑93/‑112) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947 | = 2105023 | 58 (1.440) | intergenic (‑142/‑63) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
TTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2104805‑2104974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccctccgcgggcttgcccgCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAGCGGCCCCCGCTTGGCGATCAACTGAAATGAACAGACAGACCCACCAGCAGCCGGGGCTATTCGGCTATGCTT < NC_002947/2105023‑2104876 TTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCG > 1:2322/1‑150 TGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCT > 1:1048280/1‑150 TGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCAAGCCCGCggag < 1:437578/150‑5 CGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAG > 1:999617/1‑150 TTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTAC < 2:999617/150‑1 CAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC < 1:1143840/99‑1 CAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC > 2:1143840/1‑99 GCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGC < 1:462736/150‑1 TCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAG < 2:562320/128‑1 TCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAG > 1:562320/1‑128 TTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACG > 1:186124/1‑105 TTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACG < 2:186124/105‑1 AGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG > 2:424773/1‑102 AGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG < 1:424773/102‑1 GCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGG > 1:839229/1‑88 GCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGG < 2:839229/88‑1 GGCCGCTTCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAGCGGCCCCCGCTTGGCGATCAACTGAAATGAACAGACAGACCC < 1:384958/150‑1 GGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGT < 2:1208427/68‑1 GGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGT > 1:1208427/1‑68 CCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAGCGGCCCCCGCTTGGCGATCAACCGAAATGCACAGACAGACCCACCAGCAGCCGG < 1:1201430/150‑1 CCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCG > 1:982643/1‑79 CCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCG < 2:982643/79‑1 ccCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAGCGGCCCCCGCTTGGCGATCAACTGAAATGAACAGACAGACCCACCAGCAGCCGGGGCTAT < 1:112480/148‑1 GCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGG < 1:444478/76‑1 GCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGG > 2:444478/1‑76 TTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGT > 1:457780/1‑45 TTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGT < 2:457780/45‑1 CGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAGCGGCCCCCGCTTGGCGATCAACTGAAATGAACAGACAGACCCACCAGCAGCCGGGGCTATTCGGCTATGCTT < 2:764549/150‑1 TTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2104805‑2104974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccctccgcgggcttgcccgCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAGCGGCCCCCGCTTGGCGATCAACTGAAATGAACAGACAGACCCACCAGCAGCCGGGGCTATTCGGCTATGCTT < NC_002947/2105023‑2104876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |