| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5645236 = | 48 (0.980) | 9 (0.250) | 9/188 | 3.2 | 20.4% | intergenic (+8/‑102) | PP_4950/PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter |
| ? | NC_002947 | 5645320 = | 35 (0.970) | intergenic (+92/‑18) | PP_4950/PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5645416‑5645236‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcggctttagccgcgaaagggccggcaCTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCATGGCCCGCT > NC_002947/5645320‑5645464 ACTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGT > 1:120660/1‑150ACTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGT < 1:763101/150‑1ACTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGT < 1:718180/150‑1 TGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAG < 1:774360/150‑1 TGAAGAACGCGATGGCCACCACCCAAGGGTTCCAGCGGGCGGTGACGGGTTCCAGCGGGTTGCGTTCGGGCATGACTTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGC < 2:230647/150‑1 AAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTT < 1:1156212/150‑1 GGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCTGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCG > 1:950077/1‑138 GGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCTGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCG < 2:950077/138‑1 GGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCTGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTTGGTGCGGTTTTAGCCGCG > 1:953849/1‑150 ACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCCCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAG > 2:865839/1‑150 gtagCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGCGCGGCTTTAGCCGCGAAAGG < 1:955631/146‑1 CCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCt < 1:18149/145‑2 CCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCt > 2:18149/1‑144 CACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGG > 2:1178032/1‑150 CCCAAGGGATCCAGCGGGCGGTAAGGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCC < 1:944861/150‑1 GCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTA > 1:1209065/1‑88 GCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTA < 2:1209065/88‑1 TCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGC > 1:270765/1‑76 TCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGC < 2:270765/76‑1 GGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTT > 2:243218/1‑147 GGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTT < 1:243218/147‑1 TAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGC > 1:898864/1‑61 TAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGC < 2:898864/61‑1 GCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCT < 1:782182/128‑1 GCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCT > 2:782182/1‑128 CCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGG > 1:844399/1‑131 CCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGG < 2:844399/131‑1 GCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCA > 1:92826/1‑150 GGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTG > 1:86519/1‑88 GGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTG < 2:86519/88‑1 TGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTG > 1:11949/1‑109 TGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTG < 2:11949/109‑1 GGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCA < 1:489722/139‑1 GGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCA > 2:489722/1‑139 GGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCAT > 2:986482/1‑117 GGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCAT < 1:986482/117‑1 GCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTC < 2:840623/111‑1 GCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTC > 1:840623/1‑111 GCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCC > 1:1147300/1‑150 AAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCATG > 1:925704/1‑150 AGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCATGGC < 2:925704/150‑1 CGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCATGGCCCGCc > 1:829478/1‑149 ACTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5645416‑5645236‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcggctttagccgcgaaagggccggcaCTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCATGGCCCGCT > NC_002947/5645320‑5645464 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |