| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1491962 = | 37 (0.750) | 16 (0.430) | 13/196 | 2.3 | 44.3% | intergenic (+22/+108) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | 1492052 = | 12 (0.320) | intergenic (+112/+18) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
GTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCG > NC_002947/1491813‑1492107 | gTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAg < 2:997579/150‑1 (MQ=255) ggtagcgcaaatcaaacccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGc < 2:637539‑M1/2‑1 (MQ=255) ccGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGccc > 2:121880/1‑150 (MQ=255) cGTGGAGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCt > 2:1050721/1‑150 (MQ=255) tGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTc < 1:891524/150‑1 (MQ=255) ggatcaagcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTcgcg > 2:129220‑M1/141‑150 (MQ=255) gAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCgg > 2:1233198/1‑150 (MQ=255) ggTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGc < 1:276707/150‑1 (MQ=255) ccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCAc > 1:745062‑M1/132‑146 (MQ=255) ccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCAc < 2:745062‑M1/15‑1 (MQ=255) acgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCt < 2:937867‑M1/22‑1 (MQ=255) tGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCcaca > 2:94258/1‑150 (MQ=255) gataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAg > 1:754129‑M1/122‑150 (MQ=255) gataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAg < 1:645880‑M1/29‑1 (MQ=255) aCAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCcaca < 2:343622/147‑1 (MQ=255) aCAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCcaca > 1:343622/1‑147 (MQ=255) cAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGt‑t < 1:94258/150‑1 (MQ=255) ggCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAg > 1:907595/1‑115 (MQ=255) ggCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAg < 2:907595/115‑1 (MQ=255) gtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGc < 1:1131187‑M1/42‑1 (MQ=255) gtgGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCttt < 1:121880/150‑1 (MQ=255) tgGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTg < 2:312316/150‑1 (MQ=255) gCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCCCAGGT‑TTAGCGCTGGCTTTTGGGCCTG‑c > 2:954132/1‑150 (MQ=255) aTGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGTCAATTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCtg < 1:1050721/150‑1 (MQ=255) tGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCGACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCtgt < 1:1233198/150‑1 (MQ=255) agctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTgg > 2:1131187‑M1/84‑150 (MQ=255) aCTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTgg < 2:42958/150‑1 (MQ=255) aCTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTgg < 2:176610/150‑1 (MQ=255) ttcttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCGCTTCGCGGGCACGCCCGCTCCCACAGGT‑TGAGCGCTGGCTTTGGAACCGG‑CGTAATTCCTGTTGGa > 2:609396/1‑150 (MQ=255) ccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCAc < 1:1228272‑M1/15‑1 (MQ=255) ccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCAc > 2:1228272‑M1/75‑89 (MQ=255) cgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTgg > 1:1095090‑M1/74‑140 (MQ=255) cgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTgg < 2:1095090‑M1/67‑1 (MQ=255) ggccgccaccggcgccggctgccagccaggaagagaaataaacccggggctgcgcggcaGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGa > 1:294980‑M1/60‑128 (MQ=255) ggccgccaccggcgccggctgccagccaggaagagaaataaacccggggctgcgcggcaGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGa < 2:294980‑M1/69‑1 (MQ=255) ccGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCTGGCACACCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAAATACTTTTGGAGCGGCCGGGCCCGCGAAGGGCCg > 2:557558/1‑150 (MQ=255) gccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCtt > 1:711738‑M1/56‑99 (MQ=255) gccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCtt < 2:711738‑M1/44‑1 (MQ=255) gACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTg < 1:1213549/95‑1 (MQ=255) gACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTg > 2:1213549/1‑95 (MQ=255) cAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAAcgc > 2:89925/1‑150 (MQ=255) gttCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGTTGCGGCCCt < 1:954132/150‑1 (MQ=255) ccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGa < 1:332925‑M1/69‑1 (MQ=255) ccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGa > 2:332925‑M1/46‑114 (MQ=255) ccAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCt > 1:449418/1‑89 (MQ=255) ccAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCt < 2:449418/89‑1 (MQ=255) agccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGa < 2:130763‑M1/69‑1 (MQ=255) agccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGa > 1:130763‑M1/37‑105 (MQ=255) aggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCtgt < 2:295812‑M1/65‑1 (MQ=255) aggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCtgt > 1:295812‑M1/33‑97 (MQ=255) tGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTcc > 1:637539/1‑150 (MQ=255) aTTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctgg > 1:388587/1‑150 (MQ=255) aTTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTGTGGAGCCTGTCCTGCTTGC‑CAGTGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctgg > 1:937867/1‑150 (MQ=37) aTTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGAACCCGCTGACCCACAGGG‑TTAGCGATGGCTTTGGCGGCTG‑CGTAATTCACGCGGGACCGGGCATGATCAAGAACAACCACAACACGGCCGTGGGCTTATTTCAATTCgtgg > 2:25621/1‑150 (MQ=255) ttGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGcc < 2:163233/116‑1 (MQ=255) ttGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGcc > 1:163233/1‑116 (MQ=255) aataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTA‑CGCTGGCTTTGGAGCCTG‑CGTaa > 2:399247‑M1/24‑81 (MQ=255) aataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTA‑CGCTGGCTTTGGAGCCTG‑CGTaa < 1:399247‑M1/58‑1 (MQ=255) gCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGc > 2:1176148/1‑90 (MQ=255) gCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGc < 1:1176148/90‑1 (MQ=255) tGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCgg > 2:645880/1‑150 (MQ=255) ggCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCTTGTGGGCGCGGCCGTGCCCGCGAAGGGCCGCAACGCCGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTgccg > 1:265432/1‑150 (MQ=39) | GTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGT‑TTAGCGCTGGCTTTGGAGCCTG‑CGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCG > NC_002947/1491813‑1492107 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |