| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6011544 = | 29 (0.590) | 15 (0.430) | 11/184 | 2.5 | 55.8% | intergenic (+7/+92) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| ? | NC_002947 | 6011628 = | 3 (0.090) | intergenic (+91/+8) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||
CAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCAC > NC_002947/6011405‑6011659 | cagcaACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCtt > 2:527703/1‑150 (MQ=255) atggattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTcg < 1:492997‑M1/13‑1 (MQ=255) gattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccgcacgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCgg > 1:938592‑M1/135‑150 (MQ=255) aCGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCgg < 2:287251/150‑1 (MQ=255) attactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCggg < 2:991369‑M1/17‑1 (MQ=255) tacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGc < 2:156149‑M1/22‑1 (MQ=255) tacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGc < 2:623902‑M1/22‑1 (MQ=255) ccGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGcc < 1:534834/150‑1 (MQ=255) ctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCg < 1:1229752‑M1/25‑1 (MQ=255) tggccgcgcacccggcgcggcggcgagcggttactcttttttggttcggtcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGctccta > 2:1112803‑M1/120‑148 (MQ=255) tggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCca > 2:1229752‑M1/120‑150 (MQ=255) gccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGGTCGCCCGCTCCcaca < 1:147510‑M1/33‑1 (MQ=255) gcgcgcacccggcgaggcggcgagtggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAg > 2:325980‑M1/117‑150 (MQ=255) cgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAgg > 2:147510‑M1/116‑150 (MQ=255) aaGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAg < 1:1232635/147‑1 (MQ=255) aaGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAg > 2:1232635/1‑147 (MQ=255) gcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaatgcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTcgc < 2:482309‑M1/14‑1 (MQ=255) gcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaatgcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTcgc > 1:482309‑M1/113‑126 (MQ=255) cTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCAt < 2:582548/150‑1 (MQ=255) cTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCGGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCAt < 1:65414/150‑1 (MQ=255) tGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATa < 2:1097747/150‑1 (MQ=255) aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCtgtg < 1:334710/150‑1 (MQ=255) agcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTgg > 1:60225‑M1/95‑150 (MQ=255) agcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTgg > 2:411803‑M1/95‑150 (MQ=255) cggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGa > 1:991369‑M1/93‑150 (MQ=255) tgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgaagagtcattgatcacctgcACTGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCgg > 1:156149‑M1/89‑150 (MQ=255) ttGAGCTGGCGCTTTTTGCGCAAGTCGAGCGTCGTTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGc < 2:276115/149‑1 (MQ=39) gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGa < 1:1026420/150‑1 (MQ=255) cggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAg > 2:492997‑M1/84‑150 (MQ=255) tGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCT‑GTACCTGTGGGAGCGGGCGAGCCCGCGAaga > 2:523626/1‑147 (MQ=17) tGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCT‑GTACCTGTGGGAGCGGGCGAGCCCGCGAaga < 1:523626/147‑1 (MQ=17) ctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgtACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCggg > 2:1242023‑M1/69‑131 (MQ=255) ctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgtACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCggg < 1:1242023‑M1/63‑1 (MQ=255) tggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTgg > 1:346480‑M1/68‑123 (MQ=255) tggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTgg < 2:346480‑M1/56‑1 (MQ=255) tggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCgg > 1:452849‑M1/68‑129 (MQ=255) tggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCgg < 2:452849‑M1/62‑1 (MQ=255) gcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGAc < 2:1200484/117‑1 (MQ=255) gcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGAc > 1:1200484/1‑117 (MQ=255) gcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCg > 1:497055/1‑128 (MQ=255) gcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCg < 2:497055/128‑1 (MQ=255) gcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGc > 2:231229/1‑147 (MQ=255) gcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGc < 1:231229/147‑1 (MQ=255) gcCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAg > 1:1092369/1‑90 (MQ=255) gcCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAg < 2:1092369/90‑1 (MQ=255) aGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCa > 2:616868/1‑150 (MQ=255) gCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCgg > 1:1071383/1‑104 (MQ=255) gCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCgg < 2:1071383/104‑1 (MQ=255) acaGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCcac < 1:616868/150‑1 (MQ=255) gTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGa > 2:285444/1‑86 (MQ=255) gTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGa < 1:285444/86‑1 (MQ=255) cgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAGcc > 1:686223‑M1/20‑88 (MQ=255) cgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAGcc < 2:686223‑M1/69‑1 (MQ=255) tttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAGc < 1:728810‑M1/68‑1 (MQ=255) tttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAGc > 2:728810‑M1/14‑81 (MQ=255) aTCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGc > 1:999067/1‑70 (MQ=255) aTCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGc < 2:999067/70‑1 (MQ=255) | CAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑ACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCAC > NC_002947/6011405‑6011659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |