| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5482087 = | 48 (0.980) | 19 (0.570) | 13/174 | 1.9 | 53.9% | intergenic (+3/+109) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | 5482186 = | 0 (0.000) | intergenic (+102/+10) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
CTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCAG > NC_002947/5482091‑5482333 | CTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATa > 1:657133‑M1/1‑97 (MQ=255)CTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATa < 2:657133‑M1/97‑1 (MQ=255) TGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTc < 1:553940‑M1/134‑1 (MQ=255) TGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTc > 2:553940‑M1/1‑134 (MQ=255) CTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATa > 1:769004‑M1/1‑87 (MQ=255) CTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATa < 2:769004‑M1/87‑1 (MQ=255) TATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGcc < 2:358497‑M1/150‑1 (MQ=255) aaacccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggcaggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGc > 1:871602‑M2/74‑150 (MQ=255) acccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGa > 2:857285‑M2/72‑150 (MQ=255) ACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTgg < 1:155979‑M1/147‑1 (MQ=255) ACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTgg > 2:155979‑M1/1‑147 (MQ=255) cccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCt < 1:425469‑M2/51‑1 (MQ=255) cccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCt > 2:425469‑M2/71‑121 (MQ=255) CCCGCTCCTACGCCCCATGTCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGaa < 1:44120‑M1/150‑1 (MQ=255) CCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGaa < 1:254364‑M1/150‑1 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTcccc > 2:663275‑M2/70‑97 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTcccc < 1:663275‑M2/28‑1 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGc > 1:514568‑M2/70‑129 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGc > 1:514555‑M2/70‑129 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGc < 2:514568‑M2/60‑1 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGc < 2:514555‑M2/60‑1 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCtgtg < 2:327678‑M2/75‑1 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCtgtg > 1:327678‑M2/70‑144 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAAt > 1:709166‑M2/70‑150 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAAt > 2:494274‑M2/70‑150 (MQ=255) GCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCg < 1:533996‑M1/150‑1 (MQ=255) CTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGa > 1:358497‑M1/1‑150 (MQ=255) tcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAg < 1:494274‑M2/85‑1 (MQ=255) TCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAAc > 1:862287‑M1/1‑73 (MQ=255) TCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAAc < 2:862287‑M1/73‑1 (MQ=255) TCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAg > 2:254364‑M1/1‑150 (MQ=255) tacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCcag > 1:1065757‑M2/63‑105 (MQ=255) tacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCcag < 2:1065757‑M2/43‑1 (MQ=255) TACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGt > 2:533996‑M1/1‑150 (MQ=255) cgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTc < 2:709166‑M2/97‑1 (MQ=255) gatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAg < 1:857285‑M2/100‑1 (MQ=255) gcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATg > 2:607837‑M2/35‑150 (MQ=255) gggtaaacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGaa < 2:36364‑M2/118‑1 (MQ=255) ggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAAc > 1:1027063‑M2/32‑150 (MQ=255) cgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAg > 2:111127‑M2/24‑150 (MQ=255) cggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCACAGcagcggctgggc < 1:193781‑M2/77‑4 (MQ=255) cggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGAACTCGCCACAGcagcggctgggc > 2:193781‑M2/13‑86 (MQ=255) aaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCtgt > 2:40759‑M2/3‑76 (MQ=255) aaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCtgt < 1:40759‑M2/74‑1 (MQ=255) aaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTCCGCCAGCTGATTGGCCAg > 2:111884‑M2/3‑150 (MQ=255) aaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCAg > 2:255017‑M2/3‑150 (MQ=255) | CTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCAG > NC_002947/5482091‑5482333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |