Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,549,4900CG35.5% 224.4 / 210.8 186intergenic (+58/+56)mdfA/ampGmultidrug MFS transporter/muropeptide permease AmpG
Reads supporting (aligned to +/- strand):  ref base C (36/84);  new base G (38/28);  total (74/112)
Fisher's exact test for biased strand distribution p-value = 3.08e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.77e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 212 total aligned reads displayed.

CTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAG  >  NC_002947/1549343‑1549637
                                                                                                                                                   |                                                                                                                                                    
cTGGCGGGGGGGGTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGgccgcgccg                                                                                                                                                    <  1:3033340/150‑1 (MQ=255)
 tGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGgccgcgccgc                                                                                                                                                   >  2:4341502/1‑150 (MQ=255)
    ggggggggggggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                <  2:2196007/146‑1 (MQ=255)
    ggggggggggggggggggCGTGGGCGCCGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                <  1:3645010/146‑1 (MQ=39)
    cgggggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTGTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                <  2:3068152/150‑1 (MQ=255)
    cgggggGGGGGGGGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                <  2:2793625/150‑1 (MQ=255)
    cgggggGGGGGGCGGGGGCGTGGGCGCTGGGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                <  1:2422487/150‑1 (MQ=39)
    cggcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGACGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                <  2:1190202/150‑1 (MQ=255)
    cggcggGGGGGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                <  1:4173847/150‑1 (MQ=255)
    cggcggGGGGGGCGGGGGCGTTGGCGCCGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                <  2:1408231/150‑1 (MQ=255)
      ggggggggggCGGGGGCGTTGGCGCGGTGGCCGCGGTGGTTGGTGGGGGGTGGGCGGCCTGGGGAAGGGGCTGGAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTgtgt                                                                                                                                              <  2:1466756/148‑1 (MQ=25)
      gcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTgtgt                                                                                                                                              <  2:2364394/150‑1 (MQ=25)
      gcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGt                                                                                                                                              <  2:4318414/150‑1 (MQ=255)
       gggggggggggggggggTTGGCGCTGTGGCGGCTGTGGTTTGTGGGGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                             <  1:4924154/149‑1 (MQ=25)
       gggggggggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                             <  2:2448548/149‑1 (MQ=255)
       gggggggggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                             <  2:4986836/149‑1 (MQ=255)
       gggggggggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                             <  1:4698910/149‑1 (MQ=255)
       gggggggggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                             <  2:861092/149‑1 (MQ=37)
       ggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                             <  2:2621624/149‑1 (MQ=255)
       cggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                             <  1:2091815/150‑1 (MQ=37)
       cggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                             <  2:1974542/150‑1 (MQ=37)
       cggGGGTGGCGGGGGCGTTGGCGCGGTGGCCGCTGTGGTTTGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                             <  2:1379739/150‑1 (MQ=255)
        gggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                            <  2:602927/150‑1 (MQ=37)
        gggggTGGCGGGGGCGTTGGCGCTGTGGCCGCGGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                            <  1:3932399/150‑1 (MQ=37)
         ggggggggggggGCGTTGGCGCTGTGGCCGCTGGGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAgg                                                                                                                                           <  1:382434/150‑1 (MQ=255)
         ggggggggggggGCGTTGGCGCTGGGGCCGCTGTGGTTTGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAgg                                                                                                                                           <  2:2212225/150‑1 (MQ=25)
         ggggggGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAgg                                                                                                                                           <  1:4333330/150‑1 (MQ=37)
          ggggggggggggCGTTGGCGCGGGGGCCGCGGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                          <  1:2564475/150‑1 (MQ=39)
          ggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                          <  2:38723/150‑1 (MQ=255)
          gggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                          <  1:1200115/150‑1 (MQ=255)
              ggggggggCGTTGGCGCTGTGGCGGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑Cgg                                                                                                                                     <  1:2888725/147‑1 (MQ=255)
              ggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCTGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑Cgg                                                                                                                                     <  2:1996089/147‑1 (MQ=25)
              ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑Cgg                                                                                                                                     <  1:452180/150‑1 (MQ=255)
              ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑Cgg                                                                                                                                     <  2:1263991/150‑1 (MQ=37)
              ggCGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGGGGGGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑Cgg                                                                                                                                     <  1:1398090/150‑1 (MQ=25)
              ggCGGGGGCGTGGGCGCTGGGGCCGCTGTGGTTGGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑Cgg                                                                                                                                     <  2:669915/150‑1 (MQ=255)
               ggggggggGTGGGCGCGGGGGCCGGTGGGGTTGGTGGTGGGGGGGCGGCCTGGGGACGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑Cggg                                                                                                                                    <  1:2486620/148‑1 (MQ=37)
               gCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑Cggg                                                                                                                                    <  2:1165522/150‑1 (MQ=255)
               gCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑Cggg                                                                                                                                    >  2:1175917/1‑150 (MQ=37)
                 gggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGGGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGtt                                                                                                                                  <  2:4142104/150‑1 (MQ=255)
                  ggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGttt                                                                                                                                 <  2:2633680/150‑1 (MQ=255)
                    ggCGTTGGCCCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTAc                                                                                                                               <  1:442220/150‑1 (MQ=255)
                      cGTTGGCGCTGTGGCCGCTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTAccc                                                                                                                             <  1:2552790/150‑1 (MQ=255)
                        ttGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCcgc                                                                                                                           <  2:2120659/150‑1 (MQ=255)
                               tgtgGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                             <  1:1978233/126‑1 (MQ=21)
                                  ggCCGCTGTGGTTGGGGGGGGGGGGGCGGCCTGGGGCTGGGGGGGTAGCTCGATACTCGGTATGGCCGGGGGCGGCCCCTTCGGGGGTACCCCGGCTCCTCCCCTGGGCCGCGCCGCTTTGTAGGAG‑GGGGTTTACCCGCGAAGAGGCCa                                                                                                                 <  2:1793570/150‑1 (MQ=255)
                                    ccGGTGTGTTTTGTGGGGGGTGGGCGGCCTGGGGAAGGGGCTGTCGCTGGATAATCGGTATTGCGGGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTCGGAG‑CGGGTTTACCCGCGAAGAGGCCAGc                                                                                                               <  2:1002817/150‑1 (MQ=37)
                                          tgGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑Cgg                                                                                                                                     >  1:1972670/1‑122 (MQ=21)
                                             tttGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAAt                                                                                                      <  2:370884/150‑1 (MQ=255)
                                               ggtggggGGGGGGGGGCGTGGGGATGGGGCTGTAGCTCTATAATCGGTTTGGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCACCCCCGGGCCGCGCCGCTTTGTCGGCG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATAc                                                                                                    <  2:2412833/149‑1 (MQ=25)
                                                  ggtgggtgGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCGACACAGGGCCGCGCCGCGTTGTAGGAG‑CGGGTTTACCCGCGCAGAGGCCAGCACAGGCAAAACaaa                                                                                                 >  2:5163789/1‑150 (MQ=255)
                                                  ggggggtgggCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATGGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACaaa                                                                                                 <  2:2018170/147‑1 (MQ=255)
                                                          gggggcGTGGGGACGGGGCTGTCGCTCTATAATGGGTTTGGCCGGGGCGGGCCTCTTGGGGGGTAAACCCGCTCCTACACTGGGCCGCGCCGCTTTGTTGGTG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAgg                                                                                         <  1:855618/147‑1 (MQ=25)
                                                                cTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTAGCGGGTTAAACCCCACCGAAACACGGCCCCCCCCCGGTGTTTGAGCCGGGTTTACCC‑CGAACAGGCCACCACACGCAATACAAAACATAAGGGCCGcg                                                                                   >  2:4001479/1‑149 (MQ=255)
                                                                     gacggggCTGTCGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAACCCCGCTCCTACACAGGGCCGCGCCGCTTTGTCGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGcc                                                                              <  2:1981252/147‑1 (MQ=255)
                                                                                aGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAAACCCCGCCGACACAGGGCCGCCCCCCGTTGGTGGTG‑CGGGTTTTACCCCGGAGACGCCCCCCCCCGCCAGAAAAAGCTTAACGGCCGCGCAGCCCCCCAGTGgtc                                                                   >  2:2896084/1‑150 (MQ=255)
                                                                                    cttttaTCGTTTTTGGCGGGGCCGGACAATTCGGGGCTACACCCCAGCCAACACCGGCCGGCGCCGATTTGATGGAG‑GTGTTTGACCCTCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTcc                                                               <  1:4542950/145‑1 (MQ=255)
                                                                                                ttGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTc                                                   <  2:2396826/150‑1 (MQ=255)
                                                                                                ttGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCACCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTc                                                   <  2:3582353/150‑1 (MQ=255)
                                                                                                        gccggccTCTTCGCGGGTACACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTAACCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCcccgccc                                           <  1:3414646/150‑1 (MQ=255)
                                                                                                        gccggccTCGTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTGTGTCGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCcccgccc                                           <  2:5054076/150‑1 (MQ=255)
                                                                                                                ctccgcgGGAAAACCCGCTCCTACACCGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCt                                   <  1:431062/147‑1 (MQ=255)
                                                                                                                ctTCGCGGTAAAACCCGCCCCTACACCGGGCCGCGCCGCTTTGTAGGCG‑CGGGTTAACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCt                                   <  1:2897232/150‑1 (MQ=39)
                                                                                                                 ttCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGGAGAGGCCAGCCCAGGCAATACAAAGCTTCAGGGCCGCGCAGCCACCCAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCCGCTTCCTg                                  >  1:2970063/1‑150 (MQ=37)
                                                                                                                  tCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTCGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGa                                 <  2:1138523/150‑1 (MQ=255)
                                                                                                                      gggTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGcc                             >  1:1106350/1‑150 (MQ=255)
                                                                                                                            aCCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa                       >  1:587382/1‑150 (MQ=255)
                                                                                                                            aCCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCGTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa                       >  2:1884263/1‑150 (MQ=255)
                                                                                                                             cccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                      >  1:2761595/1‑150 (MQ=255)
                                                                                                                             cccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                      >  1:4265029/1‑150 (MQ=255)
                                                                                                                             cccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                      >  1:4827157/1‑150 (MQ=255)
                                                                                                                             cccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                      >  2:2537547/1‑150 (MQ=255)
                                                                                                                             cccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                      >  1:1161178/1‑150 (MQ=21)
                                                                                                                             cccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                      >  2:1666754/1‑150 (MQ=37)
                                                                                                                              ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                     >  1:3146096/1‑150 (MQ=255)
                                                                                                                              ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                     >  1:103013/1‑150 (MQ=37)
                                                                                                                              ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                     >  2:1571870/1‑150 (MQ=37)
                                                                                                                                gCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGc                   >  1:3355629/1‑150 (MQ=37)
                                                                                                                                  tCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                 >  1:2712314/1‑150 (MQ=255)
                                                                                                                                  tCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                 >  2:477714/1‑150 (MQ=21)
                                                                                                                                  tCCTACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                 >  2:1247469/1‑150 (MQ=37)
                                                                                                                                     tACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca              >  1:45953/1‑150 (MQ=255)
                                                                                                                                     tACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca              >  1:1230328/1‑150 (MQ=255)
                                                                                                                                     tACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca              >  1:1181790/1‑150 (MQ=255)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca              >  1:1826428/1‑150 (MQ=25)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca              >  2:1531843/1‑150 (MQ=37)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca              >  2:2382465/1‑150 (MQ=37)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca              >  2:4497607/1‑150 (MQ=37)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca              >  2:1186463/1‑150 (MQ=37)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca              >  1:1353369/1‑150 (MQ=37)
                                                                                                                                       cacaGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagg            >  1:4202312/1‑150 (MQ=255)
                                                                                                                                        aaagcggcgcggcccTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagga           >  2:3155662/8‑150 (MQ=38)
                                                                                                                                        aaagcggcgcggcccTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagga           >  2:1923685/8‑150 (MQ=38)
                                                                                                                                        aaagcggcgcggcccTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagga           >  2:3037001/8‑150 (MQ=38)
                                                                                                                                        aaagcggcgcggcccTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagga           >  2:1885052/8‑150 (MQ=38)
                                                                                                                                        aaagcggcgcggcccTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagga           >  1:5045349/8‑150 (MQ=38)
                                                                                                                                          agcggcgcggcccTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc         >  2:3264332/6‑150 (MQ=255)
                                                                                                                                          agcggcgcggcccTGTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc         >  2:1902838/6‑150 (MQ=255)
                                                                                                                                                gcgccgcTTTGGAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGACGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTa   >  2:5213126/1‑150 (MQ=255)
                                                                                                                                                 cgccgtTTTGTTGGCG‑GGGTTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAg  <  1:1111014/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
CTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAG  >  NC_002947/1549343‑1549637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑