Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,471,8330TG29.4% 545.3 / 80.9 349intergenic (‑16/+108)PP_3081/PP_5560hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (62/168);  new base G (83/13);  total (168/181)
Fisher's exact test for biased strand distribution p-value = 6.06e-24
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 357 total aligned reads displayed.

GCGTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTC  >  NC_002947/3471685‑3471981
                                                                                                                                                    |                                                                                                                                                    
gcgTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCt                                                                                                                                                      <  1:4045895/149‑1 (MQ=255)
 cgTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTg                                                                                                                                                     <  1:578625/149‑1 (MQ=255)
  caaCCTGCCCGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGgc                                                                                                                                                    >  1:4318634/3‑149 (MQ=255)
    aCCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgcgg                                                                                                                                                  <  1:7099264/149‑1 (MQ=255)
     ccTGCGGGCAGGTTGTCCCAGCTCCGTTGCGGGGTCCGCTCGTCACCGGCACCGCATGCCGGGTCCCGGCCGACCTGTTGCAGGGCAAGGACGCCGCCATCAGTGAAAGACGCGGAACGGACCGACATCGCGCCTGGGCCGCCTgcggc                                                                                                                                                 <  2:5059830/149‑1 (MQ=255)
     ccTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCCCCggcggc                                                                                                                                                 >  1:937099/1‑149 (MQ=255)
     ccTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgcggc                                                                                                                                                 <  2:2555833/149‑1 (MQ=255)
     ccTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgcggc                                                                                                                                                 <  1:8382108/149‑1 (MQ=255)
       tGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGcggcgg                                                                                                                                               <  2:1466120/149‑1 (MQ=255)
         cGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCCGCGGCGGcc                                                                                                                                             >  1:213080/1‑149 (MQ=255)
          gggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCa                                                                                                                                            <  1:8158856/149‑1 (MQ=255)
          gggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGCAGGCGGCCa                                                                                                                                            <  2:7489283/149‑1 (MQ=255)
          gggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCAGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGCAGGCGGCCa                                                                                                                                            <  1:4550014/149‑1 (MQ=255)
             cAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACg                                                                                                                                         >  2:8288077/1‑149 (MQ=255)
             cAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCCGCGGCCCAcc                                                                                                                                         >  1:2248834/1‑148 (MQ=255)
             cAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGAATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGACCTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACg                                                                                                                                         >  2:1492794/1‑149 (MQ=255)
              aGGTTGTCCCAGCTCAGTTGCGGGCTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGc                                                                                                                                        <  2:7922032/149‑1 (MQ=255)
               ggTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCGGCGGCGGcccccccc                                                                                                                                       >  1:3775762/1‑143 (MQ=255)
                 ttGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCGCCTGCGGCGGCCAACGCggt                                                                                                                                     >  2:6571110/1‑149 (MQ=255)
                       cAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGTAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAggg                                                                                                                               <  2:5992362/149‑1 (MQ=255)
                       cAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGCCGGCGGCCAACCCTGTGCAggg                                                                                                                               >  2:4134990/1‑149 (MQ=255)
                        aGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACCCGGTGCAGGgc                                                                                                                              >  2:1146367/1‑149 (MQ=255)
                          cTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACACCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCCACGCTGTGCAGGgcag                                                                                                                            >  2:5757654/1‑149 (MQ=255)
                             aGTTGCGGGGTCCGCTCTTCACCGGCCCCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCaa                                                                                                                         <  2:2887666/149‑1 (MQ=255)
                              gTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCGGTGCCGGGCAGCcaa                                                                                                                        >  1:8560710/1‑149 (MQ=255)
                              gTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCAATCAGTTAAAGACGTGTAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCaaa                                                                                                                        <  2:1067255/149‑1 (MQ=255)
                                   ggggTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCTGTGCAGGGCAGCAAagccgc                                                                                                                   >  2:8318753/1‑149 (MQ=255)
                                    gggTCCGCTCTTCACCGGCACCGATTGCGGGGTCCTGGCCGACCTGTTGCTGGGCACTGACGCCGCCATCTTTTAAAGACGCGTAACTGACCGACATCGCGCCTGGGCCGCCTGGGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCg                                                                                                                  <  1:2516691/149‑1 (MQ=255)
                                     ggTCCGCCCTTCCCCGGCACCGCATGCCGGGACCGGGCCGACCGGTGGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGCCAACGCGCCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGa                                                                                                                 <  2:4782019/149‑1 (MQ=255)
                                      gTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGGCATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGaa                                                                                                                >  2:4360695/1‑149 (MQ=255)
                                      gTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCCGGGCAGCAAAGCAGCGaa                                                                                                                >  2:7221897/1‑149 (MQ=255)
                                       tCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCTGGGCAATGACGCCGCCATCTGTGAAAGACGAGGAACTGACCCACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAAc                                                                                                               <  1:620240/149‑1 (MQ=255)
                                        ccGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGGCAACGCGGTGCAGGGCAGCAAACCAGCGAACa                                                                                                              >  1:4933660/1‑149 (MQ=255)
                                         cGCTCTTCACCGGCACCGCTTGCGGGGTCCTGGCCGACCTGTTGCTGGGCAATGACGCCGCCATCTGTGAAAGACGAGTAACTGACCGACATCGCGCCTTGGCCGCCTGCGGGGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAg                                                                                                             <  2:1544804/149‑1 (MQ=255)
                                          gCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCGGTGCAGGGCAGCAAAGCAGCGCACAGc                                                                                                            >  2:3533060/1‑149 (MQ=255)
                                           ctctTCCCGGGCACCGCATGCGGGGTCCTGGCCGCCCTGTTGCAGGGCAATGACGCCGCCATCTGTTAAAGACGAGGAACTGACCGACACCGCGCCTGGGCCGCCTGGGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGcc                                                                                                           <  1:1610984/149‑1 (MQ=255)
                                             ctTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCTGGGCAATGACGCCGCCATCAGTTAAAGAGGTGGAACTGACCTACATCGCGCCTTGGCCGCCTGGGGGGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAg                                                                                                         <  1:5647030/149‑1 (MQ=255)
                                             ctTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAg                                                                                                         <  2:7765302/149‑1 (MQ=255)
                                                    ggCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGCCAACCCGGTGGAGGGCAGCAAAGCAGCCAACAGCCACGGTCTGa                                                                                                  >  1:5446295/1‑149 (MQ=255)
                                                     gCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACCCGGGGCAGGGCAGCAAAGCAGCGAACAGCCCGTGTCTGAg                                                                                                 >  2:3733958/1‑149 (MQ=255)
                                                           cATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCGCCGGCGGCGGCCAACCCGGTGGCGGGGAGCAAAGCCGCGAACAGCCCGTGTCTGGGGTGcct                                                                                           >  1:7796348/1‑147 (MQ=255)
                                                            tggcggggTCCGGGCCGACGTGTTGCTGGGCATTGCCGCCGCCATCTGTTAAAGACGCGGAACGGCCCGACATCGCGCCTTGGCCGCCTGGGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATg                                                                                          <  1:6049777/144‑1 (MQ=255)
                                                             tGCCGGGTCCTGGCCGACCTGTTGCTGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATgg                                                                                         <  2:7611816/149‑1 (MQ=255)
                                                             tGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGCGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATgg                                                                                         <  2:1926521/149‑1 (MQ=255)
                                                              gCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGt                                                                                        <  1:1423053/149‑1 (MQ=255)
                                                                 gggTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGCCCACGCGGTGCCGGGCCGCACAGCAGCGAACAGCCCGGGTCGGGGGGGCCTgggcca                                                                                     >  2:4009835/1‑145 (MQ=255)
                                                                   gTCCTGGCCGACGTGTTGCTGGGCAATGACGCCGCCATCAGTTAAAGACGAGCAACGGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATc                                                                                   <  1:3210711/149‑1 (MQ=255)
                                                                   gTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCGCCGGCGGGGGGCCACCCGGTGCAGGGGCGCAAAGCAGCGAACAGCCACGGTGTGAGTGGGAGGGTCaaac                                                                                   >  1:3831017/1‑147 (MQ=255)
                                                                   gTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCAGTGCCGGGCAGCACAGCAGCGAACACCCCGGGTGGGTGGTGCATGGTCAATc                                                                                   >  2:7670078/1‑149 (MQ=255)
                                                                     ccTGGCCGCCCTGGTGCCGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCt                                                                                 <  2:3315987/149‑1 (MQ=255)
                                                                     ccTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGCGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCt                                                                                 <  2:2358204/149‑1 (MQ=255)
                                                                     ccTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGTAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCt                                                                                 <  2:6527945/149‑1 (MQ=255)
                                                                     ccTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCt                                                                                 <  2:1397469/149‑1 (MQ=255)
                                                                      cTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGCGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCtt                                                                                <  2:3352232/149‑1 (MQ=255)
                                                                       tGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCCACGCGGTGCAGGGCAGCAAAGCAGCGCACAGCCCGTGTCTGAGGGGCATGGTCAATCCATg                                                                               >  2:4287928/1‑149 (MQ=255)
                                                                       tGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTg                                                                               <  2:2139445/149‑1 (MQ=255)
                                                                       tGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTg                                                                               <  1:7256520/149‑1 (MQ=255)
                                                                        ggCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCCGTGTCTGAGGTGCATGGTCAATCCTTgg                                                                              >  2:4956098/1‑149 (MQ=255)
                                                                            gACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGTCGGGGGCCAAACCGGTGCAGGGCAGCAAAGCATCCAAAAGCCACTGTGTGAGGTGCATGGTCAAACCGTGGCAgg                                                                          >  2:3768611/1‑149 (MQ=255)
                                                                            gACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACCCGGTGCAGGGCCGCAAAGCAGCGAACAGCCCGGGTGGGTGGTGCCTTGTCAATACATGGCAgg                                                                          >  2:3111777/1‑149 (MQ=255)
                                                                            cacgtGTTGCCGGGCAATGCCGCCGCCATCAGTTAAAGACGAGCACCTGACCGACTTCGCCCCTGGGCCGCCGGGGGGGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAgg                                                                          <  1:12286/145‑1 (MQ=255)
                                                                             aCCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGTGGAACTGTCCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAggg                                                                         <  2:1212780/149‑1 (MQ=255)
                                                                             aCCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAggg                                                                         <  2:7289216/149‑1 (MQ=255)
                                                                              ccTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACCCTGTGCAGGGCCGCAAACCAGCCCACAGCCCCTGTCTGGGGGGGATGGTCAATCCTTGGGAGGGc                                                                        >  2:1695519/1‑149 (MQ=255)
                                                                               cTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCCACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCCGTGTCGGAGGTTCATGGTCAAACCTTGGCCGGGCg                                                                       >  2:660404/1‑149 (MQ=255)
                                                                               cTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACCCGGTGCAGGGCAGCACAGCAGCGCCAAGCCAGGGTCTGGGGTGCCTGGTCCATCCGTGGCAGGGCg                                                                       >  2:172745/1‑149 (MQ=255)
                                                                                tGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCGGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCGTGGCAGGGCGt                                                                      >  2:6335690/1‑149 (MQ=255)
                                                                                 gTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTc                                                                     <  2:6905678/149‑1 (MQ=255)
                                                                                  ttGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCCGCGGCGGCCAACCCTGTGCACGGCAGCAAAGCAGCGAACAGCCCCTGTGTGAGGTGCATGGTCAAAACTTTGCAGGGCGGCa                                                                    >  1:3502157/1‑149 (MQ=255)
                                                                                  ttGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCGGCCGCGGCCCACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCCGTGGCTGAGGTGCATGGTGAATCCATGGGAGGGCGTcc                                                                    >  2:5260305/1‑148 (MQ=255)
                                                                                         gCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCTGTGCAGGGCAGCAAAACAGCGAACAGCCAGTGTCTTATGTGGATGGTCAATACATGGCAGGGCGTCACGGcgcc                                                             >  1:6423340/1‑146 (MQ=255)
                                                                                                 gccgccATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGcc                                                     <  2:2776325/149‑1 (MQ=255)
                                                                                                  ccgccATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCAGCGGCGGCCAACGCTGTGGAGGGCAGCAAAGCAGCGAACAGCCCCTGTCTGAGGTGCATGGTCAAAACTTTGCAGGGCGTCACCGCTCAGACTATccc                                                    >  1:8714134/1‑149 (MQ=255)
                                                                                                   cgccATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCCGCCCACCCGGTGCACGGCAGCAAACCCGCCCACACCCCGGGTCAGAGGGGCCGGGTCCCTCCATGGCCGGGCCGCACCGCGCAGTCGAGcccc                                                   >  2:4580043/1‑148 (MQ=255)
                                                                                                      cATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGt                                                <  2:6128951/149‑1 (MQ=255)
                                                                                                        tCAGTGAAAGTCGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCGGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAAACCTTGGCAGGGCGTCACGGCTCAGTCAAGCCCAGGTCt                                              >  2:5881189/1‑149 (MQ=255)
                                                                                                           gTGAAAGACGAGGAACTGACCGACCTCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCt                                           <  2:3233766/149‑1 (MQ=255)
                                                                                                            tGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCtt                                          <  2:1819064/149‑1 (MQ=255)
                                                                                                                 gACGAGGACCTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCg                                     <  1:4201847/149‑1 (MQ=255)
                                                                                                                      ggAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGt                                <  1:4971062/149‑1 (MQ=255)
                                                                                                                       gAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTc                               <  2:2079566/149‑1 (MQ=255)
                                                                                                                        aaCTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTcc                              <  2:249803/149‑1 (MQ=255)
                                                                                                                         aCTGACCGACAGCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCt                             <  2:6297272/149‑1 (MQ=255)
                                                                                                                              ccGACATCGCGCCTTGGGCGCCTGCGGCGGGCAAAGCTGTGGAGGGCCGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATACATGGCAGGGCGTCACGGCTCAGGCTAGCCCACGTCTGCTTCACCCGCTGTACTGGTcc                        >  2:5321824/1‑149 (MQ=255)
                                                                                                                                gACATCGCGCCTTGGGCGCCGGCGGCGGCCAACCCGGTGGAGGGCAGCAAAGCAGCGAACAGCCAGTGTGTGTGGTGCATGGTCAATACATGGGAGGGCGTCACGGCGCAGTCTATCCCAGGTCTGCGTCAGCGGCGGTCCTGGGCCta                      >  2:4452308/1‑148 (MQ=255)
                                                                                                                                    tCGCGCCTTGGCCGCCTGCGGCGACCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCa                  >  2:5789604/1‑149 (MQ=255)
                                                                                                                                     cgcgCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAg                 <  2:865636/149‑1 (MQ=255)
                                                                                                                                     cgcgCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAg                 <  1:3413006/149‑1 (MQ=255)
                                                                                                                                     cgcgCCTTGCCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAg                 <  1:1782608/149‑1 (MQ=255)
                                                                                                                                       cgcCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTg               <  1:6770908/149‑1 (MQ=255)
                                                                                                                                           ttGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTc           >  1:8027609/1‑149 (MQ=255)
                                                                                                                                            tGGCCGCCGCAGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTcc          >  1:8079885/1‑149 (MQ=255)
                                                                                                                                            tGGCCGCCGCAGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTcc          >  1:2935519/1‑149 (MQ=255)
                                                                                                                                              gccgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGc        >  2:2408409/1‑149 (MQ=255)
                                                                                                                                               ccgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCt       >  1:7700226/1‑149 (MQ=255)
                                                                                                                                               ccgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCt       >  1:4520564/1‑149 (MQ=255)
                                                                                                                                                cgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTg      <  2:8010729/149‑1 (MQ=255)
                                                                                                                                                cgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTg      <  1:6069578/149‑1 (MQ=255)
                                                                                                                                                 gccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCGGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTgg     >  2:3189182/1‑149 (MQ=255)
                                                                                                                                                    tGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTc  <  1:8783639/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GCGTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTC  >  NC_002947/3471685‑3471981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑