New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 742918 = | NA (NA) | 7 (0.270) | 6/282 | 2.2 | NA | coding (1016/1422 nt) | PP_0635 | group II intron‑encoding maturase |
? | NC_002947 | 742948 = | NA (NA) | coding (1046/1422 nt) | PP_0635 | group II intron‑encoding maturase |
CAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/743072‑742918 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctcaGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTC > NC_002947/742948‑743096 CAGTTCCTCAAGCGGCCGCTTGCTCTTGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCAGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAG > 1:181125/1‑150 CAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAG < 1:456820/150‑1 CAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAG < 1:90850/150‑1 CAGGTCCTCACGCGGCCGCTCGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGCTGACAGTCGCCATGTGGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAG < 2:506426/150‑1 AGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGG > 2:509125/1‑150 AGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGG > 2:119339/1‑150 AGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCGTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGG > 2:111867/1‑150 GTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC < 2:551857/150‑1 GTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC < 1:263912/150‑1 GTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC > 2:529101/1‑150 CCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAG > 2:60281/1‑150 AGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGG > 2:255359/1‑150 ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTT > 2:275813/1‑150 ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTT > 2:294273/1‑150 TGAGCCGGTCGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGG > 1:288151/1‑150 CGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATG < 1:60281/150‑1 TAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTGCTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCA > 2:339243/1‑150 GGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACA > 1:182565/1‑150 TCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAAC > 2:1139/1‑150 TCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAAC > 1:4265/1‑150 AGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTTTCATCGAGCGGATCAACGCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAAGTGGATGTTTTGGTCAGGCACAAACTC < 2:109791/150‑1 AGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTC > 2:453925/1‑150 AGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTC > 1:592439/1‑150 AGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTC > 1:142628/1‑150 CAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/743072‑742918 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctcaGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTC > NC_002947/742948‑743096 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |