New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 79684333 (1.220)5 (0.210) 4/262 2.7 14.4% intergenic (+42/‑148) PP_0681/PP_0682 hypothetical protein/inner membrane protein
?NC_002947 = 796881 30 (1.240)intergenic (+80/‑110) PP_0681/PP_0682 hypothetical protein/inner membrane protein
Rejected: Frequency below/above cutoff threshold.

CCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTC  >  NC_002947/796703‑796990
                                                                                                                                            |                                                                                                                                                   
ccGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCacactccca                                                                                                                                            >  2:174433‑M1/1‑141 (MQ=255)
  gCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAgg                                                                                                                                          <  2:401365/150‑1 (MQ=255)
       tCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAg                                                                                                                                     >  1:403239/1‑150 (MQ=255)
           gtgtCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATc                                                                                                                                 >  2:560171/1‑150 (MQ=255)
                tGCATTTGCAGGCGCGGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCCGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCcaca                                                                                                                                            <  2:311209/134‑1 (MQ=255)
                tGCATTTGCAGGCGCGGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCCGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCcaca                                                                                                                                            >  1:311209/1‑134 (MQ=255)
                 gCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTg                                                                                                                           <  1:254280/150‑1 (MQ=255)
                 gCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTg                                                                                                                           >  1:338357/1‑150 (MQ=255)
                      tGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCtgtg                                                                                                                      <  2:328532/150‑1 (MQ=255)
                         aGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGa                                                                                                                   <  1:193904/150‑1 (MQ=255)
                           gcgcAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAgt                                                                                                                 <  1:591423/150‑1 (MQ=255)
                           gcgcAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAgt                                                                                                                 <  2:504967/150‑1 (MQ=255)
                                  tGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCacactcccacagcaagccgatgctgtacctgtgggagcggcct                                                                                                          <  1:238781‑M1/150‑44 (MQ=255)
                                     ggcggATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCacactcccacagcaagccgatgctgtacctgtgggagcggccttgt                                                                                                       <  2:566686‑M1/150‑47 (MQ=255)
                                     ggcggATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCacactcccacagcaagccgatgctgtacctgtgggagcggccttgt                                                                                                       <  2:566736‑M1/150‑47 (MQ=255)
                                             aaTGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCacactcccacagcaagccgatgctgtacctgtgggagcggccttgtgtcgcgat                                                                                               <  1:174433‑M1/150‑55 (MQ=255)
                                                       ggTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGGCTTGTGTCGCGATCAGGCTGCgg                                                                                     >  2:115480/1‑150 (MQ=255)
                                                        gtgtCGCAACGTGGGTGATTACCTTTTTCATCCTGAGACCTGAAGACTGCGGGGGCCGCTTTGCGGCCAATCGCGACACAAGGCCGCTCCCACAGGTACTGCTTGGGCTTGCTTTGGGATTGTGGCCTTGTGTCGCGATCAGGCTGCGGa                                                                                    <  1:356470/150‑1 (MQ=37)
                                                           tCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAATGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGagca                                                                                 >  1:192991/1‑150 (MQ=255)
                                                             gCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCCCGACACAAGGCCCCTACCCCAGGTACAGCCTCGGCGTGCGGTGGGGGGGTGGCCGTGGGTCGCGCTCAGGCTGCGGggcagc                                                                               >  1:261496/1‑150 (MQ=255)
                                                                    gggggATTACCAGTTTCATCCTGAGACCTGAAGAAGGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCggg                                                                        <  2:63943/150‑1 (MQ=255)
                                                                         aTTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCtttt                                                                   <  1:598383/150‑1 (MQ=255)
                                                                                gTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTaa                                                            <  1:544279/150‑1 (MQ=255)
                                                                                  ttCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACa                                                          <  1:454395/150‑1 (MQ=255)
                                                                                      tCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCGTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGtg                                                      >  2:128371/1‑150 (MQ=255)
                                                                                           agaCCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGtggctgg                                                 <  2:435493/150‑1 (MQ=255)
                                                                                               cTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACCGGGACAGCATCGGCTTGCGGTGGGAGTGTGGGCTTGTGTCGCGATCAGGCGGCGGAGCAGCCCCCGGGCGGGTGCTGTAACAGGTggctggcttt                                             >  1:440329/1‑148 (MQ=38)
                                                                                               cTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCGGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCtat                                             >  1:440326/1‑150 (MQ=255)
                                                                                                     aaTGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGc                                       <  1:550994/150‑1 (MQ=255)
                                                                                                           ggggCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGc                                 <  2:423771/150‑1 (MQ=255)
                                                                                                                tagcttGGGGCCCATCGCGACACACGGCCGCCCCCACAGGTACCGCATCGGCTTGGTGGGGGATTTTGTCCTTGTGGCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCttttt                            <  1:32662/146‑1 (MQ=255)
                                                                                                                      gCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTTCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCGTTTGCGGTAACAGGTGGCAGGCTATACTCGCCGTCGCTTTTTTAgatc                      >  2:32662/1‑147 (MQ=255)
                                                                                                                             aTCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTggccttgtgtcgcgatgggccgcaaagcggccccggcattcttcaggtctcaggatgaaactggtaatcccccaggttgcgacaccgctcaccatt               <  1:174433‑M2/150‑97 (MQ=255)
                                                                                                                                     acaAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTggccttgtgtcgcgatgggccgcaaagcggccccggcattcttcaggtctcaggatgaaactggtaatcccccaggttgcgacaccgctcaccattgatccgcc       <  2:566686‑M2/150‑105 (MQ=255)
                                                                                                                                     acaAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTggccttgtgtcgcgatgggccgcaaagcggccccggcattcttcaggtctcaggatgaaactggtaatcccccaggttgcgacaccgctcaccattgatccgcc       <  2:566736‑M2/150‑105 (MQ=255)
                                                                                                                                        aGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTggccttgtgtcgcgatgggccgcaaagcggccccggcattcttcaggtctcaggatgaaactggtaatcccccaggttgcgacaccgctcaccattgatccgccgca    <  1:238781‑M2/150‑108 (MQ=255)
                                                                                                                                        aGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACt    >  2:2567/1‑150 (MQ=255)
                                                                                                                                          gCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTg                                                                  <  1:560439/86‑1 (MQ=255)
                                                                                                                                          gCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTg                                                                  <  1:560430/86‑1 (MQ=255)
                                                                                                                                          gCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTg                                                                  >  2:560430/1‑86 (MQ=255)
                                                                                                                                          gCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTg                                                                  >  2:560439/1‑86 (MQ=255)
                                                                                                                                          gCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTc  >  1:261561/1‑150 (MQ=255)
                                                                                                                                            |                                                                                                                                                   
CCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTC  >  NC_002947/796703‑796990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.