New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1154932 = | 20 (0.740) | 6 (0.240) | 5/270 | 2.4 | 29.7% | intergenic (‑224/+33) | PP_1008/gapA | RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase |
? | NC_002947 | = 2076208 | 10 (0.400) | intergenic (+168/+59) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor |
GTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCGGG > NC_002947/1154789‑1155071 | gTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCgg < 1:44485/150‑1 (MQ=255) cggtggtgtgagaggacggcgggtgtgaatccgcctcctactcgattttcagggccattggggctgctgtgcagcccatcgcgacacaagcgggcttgcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgTTCGCgg > 2:539582‑M1/144‑150 (MQ=255) cggtggtgtgagaggacggcgggtgtgaatccgcctcctactcgattttcagggccattggggctgctgtgcagcccatcgcgacacaagcgggcttgcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgTTCGCgg > 1:497854‑M1/144‑150 (MQ=255) aTTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAgg > 1:153849/1‑150 (MQ=255) ttGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGc < 1:258366/150‑1 (MQ=255) gATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACg > 1:29266/1‑150 (MQ=255) gTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTcgc < 1:546057/150‑1 (MQ=255) gTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTcgc < 1:546061/150‑1 (MQ=255) gTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTcgc > 2:359992/1‑150 (MQ=255) tttttttGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCACTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTcagc > 1:455680/1‑150 (MQ=255) cTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAg > 2:328195/1‑150 (MQ=255) tCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGt > 1:127729/1‑150 (MQ=255) gCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCg > 1:496379/1‑150 (MQ=255) ccTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAAccc > 2:331781/1‑150 (MQ=255) gAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCg > 2:593881/1‑150 (MQ=255) gCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCa > 1:233835/1‑150 (MQ=255) ttgcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATa < 2:597373‑M1/102‑1 (MQ=255) ttgcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATa < 2:597369‑M1/102‑1 (MQ=255) cttgcccgcgaagccaacaccgtggtggatggcacgggcttcgc‑‑‑‑‑GGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAg < 2:92212‑M1/106‑1 (MQ=255) cgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAgg < 2:157279‑M1/107‑1 (MQ=255) gaagccaacaccgtggtggatggcatgggcttcgcccgtgTTCGCGGGCAAGCCCGCTCCCCCAGGGATCGCGCCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCa < 2:74892‑M1/110‑1 (MQ=255) ggcacGGGCTTCGCCCGTGTCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAg > 2:258606/3‑150 (MQ=255) acGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCAc > 2:547325/1‑150 (MQ=255) cGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGa < 2:153849/150‑1 (MQ=255) accgtggtggatggcacgggcttcgcccgtgTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGa > 1:157279‑M1/32‑150 (MQ=255) tCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTg > 2:524010/1‑150 (MQ=255) tCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTg > 2:524012/1‑150 (MQ=255) cGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCggg < 2:358479/150‑1 (MQ=255) | GTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCGGG > NC_002947/1154789‑1155071 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |