New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5660597	19 (0.700)	6 (0.230)	5/280	2.5	21.4%	intergenic (‑52/+100)	epd/tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
	?	NC_002947	= 5660674	26 (1.010)					intergenic (‑129/+23)	epd/tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A

AAACCGGCCTTTGCCCCCCGCTCGAACAGCGCGCGCAGGACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCC  >  NC_002947/5660448‑5660750                                                                                                                                                      |                                                                                                                                                          aaaCCGGCCTTTGCCCCCCGCTCGAACAGCGCGCGCAGGACACAGCGGCCGATACGGCCATGACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGT                                                                                                                                                           <  2:376314‑M1/150‑1 (MQ=255)          tttGCCCCCCGCTCGAACAGCGCGCGCAGGACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTcgc                                                                                                                                                  <  2:147919/150‑1 (MQ=255)               cccccGCTCGAACAGCGCGCGCAGGACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCa                                                                                                                                             >  1:166553/1‑150 (MQ=255)                 cccGCTCGAACAGCGCGCGCAGGACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAg                                                                                                                                           >  2:519610/1‑150 (MQ=255)                       cGAACAGCGCGCGCAGGACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCTTGCCCGcg                                                                                                                                     <  1:361702/150‑2 (MQ=255)                        gAACAGCGCGCGCAGGACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTc                                                                                                                                    <  2:54492/150‑1 (MQ=255)                               gcgcgcAGGACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAgg                                                                                                                             <  1:286891/150‑1 (MQ=255)                               gcgcgcAGGACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAgg                                                                                                                             <  1:410818/150‑1 (MQ=255)                                     aGGACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCa                                                                                                                       >  1:199066/1‑150 (MQ=255)                                      ggACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCAt                                                                                                                      <  2:334434/150‑1 (MQ=255)                                        acacAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGc                                                                                                                    <  2:188109/150‑1 (MQ=255)                                        acacAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGc                                                                                                                    >  1:65362/1‑150 (MQ=255)                                           caGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCACGCCCGCTCCCACAGGGTTTCATGCAAc                                                                                                                 >  2:186254/1‑150 (MQ=255)                                                  cGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGG‑‑‑‑‑GCGGTGTcgccttcattcgcgggcaagcccgctcccacagaggttgcatgaaaccctgtgg                                                                                                     <  1:563735‑M1/150‑55 (MQ=255)                                                     tACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTggcattcgcgggcaagcccgctcccacagaggttgcatgaaaccctgtggga                                                                                                       <  1:488596‑M1/150‑53 (MQ=255)                                                       cGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGc                                                                                                     <  2:318507/150‑1 (MQ=255)                                                         gCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTggcattcgcgggcaagcccgctcccacagaggttgcatgaaaccctgtgggagcgg                                                                                                   <  1:311641‑M1/150‑57 (MQ=255)                                                         gCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTcgccttcattcgcgggcaagcccgctcccacagaggttgcatgaaaccctgtggga                                                                                                   <  1:482489‑M1/150‑57 (MQ=255)                                                           cATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCACTTGTCGTCAGCCTGCGGAATTTGCGGTGTcgccttcattcgcgggcaagcccgctcccacagaggttgcatgaaaccctgtgggagc                                                                                                 <  2:323614‑M1/150‑59 (MQ=255)                                                                   ttGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCcgc                                                                                         <  2:215382/150‑1 (MQ=255)                                                                           aaCTTTGTCGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTggcattcgcgggcaagcccgctcccacagaggttgcatgaaaccctgtgggagcgggcttgcccgcgaatgcca                                                                                 <  2:500958‑M1/150‑75 (MQ=255)                                                                                                  ttCGGGGCTCACGAGACAGTTCTATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTa                                                          <  2:45947/150‑1 (MQ=255)                                                                                                                gaCAGTTCAAGTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCcag                                            <  1:427673/150‑1 (MQ=255)                                                                                                                         aTTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTc                                   >  2:352259/1‑150 (MQ=255)                                                                                                                                    cccgCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGa                        <  2:90912/147‑1 (MQ=255)                                                                                                                                                gCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGTAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCa            <  2:65362/150‑1 (MQ=255)                                                                                                                                                      tgGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATG‑‑‑‑CCacaccgcaaattccgcaggctgacgacaattgaactgtctcgtgagccccgaatgccccaccgtcccgacaaagtt  <  2:500958‑M2/150‑77 (MQ=255)                                                                                                                                                      |                                                                                                                                                          AAACCGGCCTTTGCCCCCCGCTCGAACAGCGCGCGCAGGACACAGCGGCCGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCC  >  NC_002947/5660448‑5660750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.