| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5821859 = | 16 (0.590) | 6 (0.250) | 5/258 | 2.3 | 32.4% | intergenic (+40/+89) | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
| ? | NC_002947 | 5821922 = | 11 (0.460) | intergenic (+103/+26) | PP_5092/pilT | NLP/P60 protein/twitching motility protein | |||||
AGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCA > NC_002947/5821721‑5822006 | ggaggggcggttggcgcagttgtcttcagtgatgcagggcggggcggcggaggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccctttcgcgggcgCGCCCg < 1:163828‑M1/6‑1 (MQ=255) gTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCGTGCCCGcgaaggg < 1:2206/150‑7 (MQ=255) ttggcgcagttgtcttcagtgatgcagggcggggcggcggaggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccctttcgcgggcgCGCCCGCTCCCACAgg > 2:410764‑M1/135‑150 (MQ=255) cTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGcgcg > 1:452933/1‑150 (MQ=255) cTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCCCTCCCACAGGTAGcgcg > 1:498493/1‑150 (MQ=255) cAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTc < 1:34694/150‑1 (MQ=255) gAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGCAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTcac < 1:522710/150‑1 (MQ=255) gAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTcac < 1:253135/150‑1 (MQ=255) ggcggggcggcggaggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccctttcgcgggcaCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTca > 2:9466‑M1/108‑150 (MQ=255) cggggcggcggcggggtcgctgacgagggagggggggttgcggagggtgagggagcgagggttgatcataggcttgtagtacctgcaaaggccccttcgcgggcaCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTcaca > 1:207186‑M1/106‑150 (MQ=255) cggggcggcggaggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccccttcgcgggcaCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTcaca > 1:207180‑M1/106‑150 (MQ=255) gtggtgGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTgg < 2:102132/150‑1 (MQ=255) gcggcggaggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccctttcgcgggcgCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATAcc > 2:163828‑M1/102‑150 (MQ=255) ggCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCTGCAAAGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCtgtg < 1:298328/150‑1 (MQ=255) ggcggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccctttcgcgggcgCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTgg > 1:155507‑M1/97‑150 (MQ=255) aaGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAg < 1:264777/102‑1 (MQ=255) aaGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAg > 2:264777/1‑102 (MQ=255) gcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGGTCCCACAGGTAGCGCGTCGCTGTGGCGCGGAGCTCACATACCTGTTGGTGCGGGGGGGCCCGCGaaa > 2:37106/1‑150 (MQ=255) cagcaggTGAGTCTGGCCAAGCTTTAAGCTTATCGGCGCTATCCGTTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCCCGCCCGCTCCCCCAGGTAGCGCGTCGCTCTCGCGCGAAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGc < 1:168931/150‑1 (MQ=38) tCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCGCCCACAGGTAGCGCCTCGCGCTCGCGCGCAGCGCACAAACCGGTGGGAGCGGGCGCGCCCCCGCAAGGGGCTTTTCAGGGACTACaa > 2:260460/1‑150 (MQ=255) gctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccccttcgcgggcaCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGtac > 1:396768‑M1/61‑150 (MQ=255) aaGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAcc < 1:455870/150‑1 (MQ=255) gcTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa < 2:338782/150‑1 (MQ=255) cACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCa < 1:452129/150‑1 (MQ=255) | AGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCA > NC_002947/5821721‑5822006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |