New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1424502 =	5 (0.180)	5 (0.240)	3/230	2.8	50.2%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1424596 =	6 (0.280)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

TTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTT  >  NC_002947/1424448‑1424745                                                                                                                                                     |                                                                                                                                                      ttgtgttgtCGGTGGGCATTGTTTTGTTTCACTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCCCAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTg                                                                                                                                                      >  2:93949/1‑150 (MQ=255)                        ttgtttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCCCACCCACAGGTACTGTGCAGTGCGTGACGGCTGGGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCAGCAAATGAAAGGTGTGAgg                                                                                                                               >  1:343910/1‑150 (MQ=38)                                      tCTGGGTTGCCTGGCCTGGCCTCTCCGCGGCCACCCCCGCTCCAACAGGTACTTTCCAGTGCGTGACGGCTGTGGTTACCCTGTGGCAGCGGGCTTCCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAAt                                                                                                                 <  2:122479/150‑1 (MQ=255)                                                                             ctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCa                                                                          >  1:42207‑M2/73‑150 (MQ=255)                                                                              tcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAg                                                                         >  2:27843‑M2/72‑150 (MQ=255)                                                                              tcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAg                                                                         >  2:363250‑M2/72‑150 (MQ=255)                                                                              tcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGATGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAg                                                                         >  2:381812‑M2/72‑150 (MQ=255)                                                                                          tgtgCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGc                                                             >  1:403626/1‑150 (MQ=255)                                                                                          tgtgCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGc                                                             >  1:403619/1‑150 (MQ=255)                                                                                             acagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGATGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTc                                                          <  1:381812‑M2/94‑1 (MQ=255)                                                                                                   ggTGACGGCTGTGGGCACCGTGTGGGAGGGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTc                                                    <  2:154571/149‑1 (MQ=255)                                                                                                                     cctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCAt                                  >  2:165595‑M2/33‑150 (MQ=255)                                                                                                                     cctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCAt                                  >  2:476081‑M2/33‑150 (MQ=255)                                                                                                                        ctcttcgcgggcacgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCAc                               >  2:299363‑M2/30‑150 (MQ=255)                                                                                                                         tcttcgcgggcacgcccgcgaagaggccTGACCTGCGAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCACCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCAGGTCATGGATCACGGCCTGCATCACg                              >  2:358467‑M2/29‑150 (MQ=255)                                                                                                                                        ccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCg               >  2:427013‑M2/14‑150 (MQ=255)                                                                                                                                              agaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGt         <  1:427013‑M2/143‑1 (MQ=255)                                                                                                                                                     tGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGtt  >  2:560779/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTT  >  NC_002947/1424448‑1424745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.