New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6005937	11 (0.410)	3 (0.140)	3/234	2.8	21.6%	intergenic (+39/+70)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	= 6005971	13 (0.600)					intergenic (+73/+36)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase

CCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCG  >  NC_002947/6005826‑6006107                                                                                                                                                  |                                                                                                                                         ccGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgta                                                                                                                                      >  1:472785‑M2/1‑146 (MQ=255)                  tgCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttacccgc                                                                                                                     >  1:126234‑M2/1‑129 (MQ=255)                                                            ggttgCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACGTAGTGCACCGCCTGCGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTAACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGcccc                                                                           <  2:462049/150‑1 (MQ=255)                                                                                       tctTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCa                                                <  2:344801/150‑1 (MQ=255)                                                                                       tctTCGCGGGTAAAACCGCTCCTACAAGTAGTGCACCGCCAGAGAGGGCTGTGGTGAAACGGTAGGAGCGGGTTTAACCGCGAACAGGCCAGTACTTAAAACACAAACCTCAGGCACAGCCCCGCGTGGTACAGCGAAAAACCGGACTCa                                                >  2:208428/1‑150 (MQ=255)                                                                                                    aCCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTcc                                   >  1:95732/1‑150 (MQ=255)                                                                                                         cTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaacgactc                              <  2:203376‑M2/150‑109 (MQ=255)                                                                                                             tACACGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTgg                                                                     <  2:876/107‑1 (MQ=255)                                                                                                             tACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTgg                                                                     >  1:876/1‑107 (MQ=255)                                                                                                             tACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAAcc                                                       <  1:71262/121‑1 (MQ=255)                                                                                                             tACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAAcc                                                       >  2:71262/1‑121 (MQ=255)                                                                                                                aaGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttct                                              >  1:599620‑M2/1‑35 (MQ=255)                                                                                                                aaGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttct                                              <  2:599620‑M2/127‑93 (MQ=255)                                                                                                                           cGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAg                                                                                     >  2:281701/1‑77 (MQ=255)                                                                                                                           cGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAg                                                                                     <  1:281701/77‑1 (MQ=255)                                                                                                                             ccTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCt          >  2:28623/1‑150 (MQ=255)                                                                                                                                 agagGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATc      <  1:382086/150‑1 (MQ=255)                                                                                                                                     ggCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCg  <  2:609440/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                         CCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCG  >  NC_002947/6005826‑6006107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.