| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,227,996 | 0 | C | G | 50.0% | ‑6.2 / 11.8 | 14 | R433P (CGG→CCG) | PP_4603 | transposase |
| Reads supporting (aligned to +/- strand): ref base C (0/7); new base G (0/7); total (0/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.76e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGG > NC_002947/5227900‑5228137 | gcccAGCCCGCACGGGCTGGTTCATCTCACAACAAAAAAAATCAACCCCATTTTTTTCTAACCAAACAAGCGGCCACCATTTCATACCCCACTTACCGGGCTTTGCGAACAAAACCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAAc < 2:5023189/147‑1 (MQ=0) acacaacaaacaaaATCCAACCCATTGTTTTCAAACCACACAACCGCCCACCACTTCATACCCCACTTACCGGGCTTTGCCAACCAAACCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTACAACATAAGc < 2:8193341/144‑1 (MQ=1) accacacaaaATCCACCCCTTTTTTTTCTACCCACCCCCGGGGCCCCCGGTTGAGCCCCCTGTGGCCGGGCTTTGGGAACCAACGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGc < 2:1366177/145‑1 (MQ=0) aaaaaaaTCCAACCATTTTTTTTCTAAGCACACACGCGGCCACCTTTTGATACCCCTGTTTCGGGGCTTTGCGAAGAAAACCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGcttct < 1:3246556/147‑1 (MQ=1) caaatggCAACCCAGTGTTTTCTAAGCACTCACGCGGCCACCAGTTTATACCCCATTTCCGGGGCTTTGCTAAGCAATGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTg < 2:6971538/144‑1 (MQ=1) ccaccccATTGTTTTCTAACCACTCACGCGGCCACCTTTTGATACCCCAGTTTCCGGGCTTTGCTAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAAc < 2:187403/146‑1 (MQ=1) caccccTTTTTTTTCTAACCACTCACGCGGCCACCAGTGTACACCCCTGTTTCGGGGCTTTGCGACGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACa < 1:6689458/147‑1 (MQ=1) cctttGTTTTCTAACCACTCATGCGGCCACCTGTTGATCCCCCCGTTTCCGGGCTTTGCGACGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGtt < 2:885913/147‑1 (MQ=1) actcccgcgcCCACCTTTTTATCCCCCTTTTTCGGGGTTTTGCCATCAAACCCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGcc < 1:947210/144‑1 (MQ=1) acacgCGGCCACCTGTTGACACCCCCGTTTCGGGGCTTGGCTAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCaa < 2:2049895/146‑1 (MQ=1) cacgCGGCCACCTGTTGATCCCCCTGTTTCGGGGCTTTGCGACGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAAc < 1:3394602/147‑1 (MQ=1) caacaaGTTTATACCCCATTTACCGGGCTTTCCTAACAAAACCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATgcg < 1:7991832/145‑1 (MQ=1) cctgTTTCGGGTCTTTGCGACGCAACCCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATgg < 1:3152695/147‑1 (MQ=1) cctgTTTCCGGGCTTTGCTAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATgg < 2:7774146/147‑1 (MQ=1) | GCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGG > NC_002947/5227900‑5228137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |