Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,227,9960CG50.0% ‑6.2 / 11.8 14R433P (CGG→CCG) PP_4603transposase
Reads supporting (aligned to +/- strand):  ref base C (0/7);  new base G (0/7);  total (0/14)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.76e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

GCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGG  >  NC_002947/5227900‑5228137
                                                                                                |                                                                                                                                             
gcccAGCCCGCACGGGCTGGTTCATCTCACAACAAAAAAAATCAACCCCATTTTTTTCTAACCAAACAAGCGGCCACCATTTCATACCCCACTTACCGGGCTTTGCGAACAAAACCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAAc                                                                                          <  2:5023189/147‑1 (MQ=0)
                          acacaacaaacaaaATCCAACCCATTGTTTTCAAACCACACAACCGCCCACCACTTCATACCCCACTTACCGGGCTTTGCCAACCAAACCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTACAACATAAGc                                                                <  2:8193341/144‑1 (MQ=1)
                              accacacaaaATCCACCCCTTTTTTTTCTACCCACCCCCGGGGCCCCCGGTTGAGCCCCCTGTGGCCGGGCTTTGGGAACCAACGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGc                                                            <  2:1366177/145‑1 (MQ=0)
                                  aaaaaaaTCCAACCATTTTTTTTCTAAGCACACACGCGGCCACCTTTTGATACCCCTGTTTCGGGGCTTTGCGAAGAAAACCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGcttct                                                        <  1:3246556/147‑1 (MQ=1)
                                    caaatggCAACCCAGTGTTTTCTAAGCACTCACGCGGCCACCAGTTTATACCCCATTTCCGGGGCTTTGCTAAGCAATGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTg                                                      <  2:6971538/144‑1 (MQ=1)
                                          ccaccccATTGTTTTCTAACCACTCACGCGGCCACCTTTTGATACCCCAGTTTCCGGGCTTTGCTAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAAc                                                <  2:187403/146‑1 (MQ=1)
                                           caccccTTTTTTTTCTAACCACTCACGCGGCCACCAGTGTACACCCCTGTTTCGGGGCTTTGCGACGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACa                                               <  1:6689458/147‑1 (MQ=1)
                                               cctttGTTTTCTAACCACTCATGCGGCCACCTGTTGATCCCCCCGTTTCCGGGCTTTGCGACGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGtt                                           <  2:885913/147‑1 (MQ=1)
                                                               actcccgcgcCCACCTTTTTATCCCCCTTTTTCGGGGTTTTGCCATCAAACCCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGcc                           <  1:947210/144‑1 (MQ=1)
                                                                 acacgCGGCCACCTGTTGACACCCCCGTTTCGGGGCTTGGCTAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCaa                         <  2:2049895/146‑1 (MQ=1)
                                                                  cacgCGGCCACCTGTTGATCCCCCTGTTTCGGGGCTTTGCGACGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAAc                        <  1:3394602/147‑1 (MQ=1)
                                                                         caacaaGTTTATACCCCATTTACCGGGCTTTCCTAACAAAACCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATgcg                 <  1:7991832/145‑1 (MQ=1)
                                                                                        cctgTTTCGGGTCTTTGCGACGCAACCCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATgg  <  1:3152695/147‑1 (MQ=1)
                                                                                        cctgTTTCCGGGCTTTGCTAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATgg  <  2:7774146/147‑1 (MQ=1)
                                                                                                |                                                                                                                                             
GCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGG  >  NC_002947/5227900‑5228137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: