Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,287,7660GC41.1% 231.8 / inf 292intergenic (‑166/+63)PP_2010/PP_2011cytochrome b561/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (67/105);  new base C (73/47);  total (140/152)
Fisher's exact test for biased strand distribution p-value = 3.37e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.22e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 305 total aligned reads displayed.

CAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAG  >  NC_002947/2287617‑2287915
                                                                                                                                                     |                                                                                                                                                       
caGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCATGCCCGCTCCCACAGTCCAACTGCACAGTCTTg                                                                                                                                                         <  2:6863119/150‑1 (MQ=255)
caGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTg                                                                                                                                                         <  2:7937791/150‑1 (MQ=255)
caGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTg                                                                                                                                                         <  1:3428421/150‑1 (MQ=255)
   gTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGaa                                                                                                                                                      >  2:8371567/1‑150 (MQ=255)
    tCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCTCGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAg                                                                                                                                                     >  2:523426/1‑150 (MQ=255)
       gAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCt                                                                                                                                                  <  2:1201957/150‑1 (MQ=255)
       gAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCt                                                                                                                                                  <  2:2001135/150‑1 (MQ=255)
       gAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCt                                                                                                                                                  >  2:7850513/1‑150 (MQ=255)
         aTGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACtgt                                                                                                                                                <  2:3378180/150‑1 (MQ=255)
          tGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACtgtg                                                                                                                                               <  1:4829807/150‑1 (MQ=255)
            gcgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑Ca                                                                                                                                            <  2:2110099/150‑1 (MQ=255)
            gcgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑Ca                                                                                                                                            <  2:3559559/150‑1 (MQ=255)
            gcgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑Ca                                                                                                                                            <  2:630867/150‑1 (MQ=255)
            gcgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑Ca                                                                                                                                            <  1:8620839/150‑1 (MQ=255)
            gcgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑Ca                                                                                                                                            <  1:4659577/150‑1 (MQ=255)
            gcgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGGTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑Ca                                                                                                                                            <  1:5981469/150‑1 (MQ=37)
             cgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAg                                                                                                                                           <  1:7841966/150‑1 (MQ=255)
             cgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCCGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAg                                                                                                                                           <  1:8825687/150‑1 (MQ=255)
              gcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGt                                                                                                                                          <  1:2130748/150‑1 (MQ=37)
               ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGtt                                                                                                                                         <  1:8773586/150‑1 (MQ=255)
               ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGtt                                                                                                                                         <  2:7611651/150‑1 (MQ=255)
               ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGtt                                                                                                                                         <  2:8322757/150‑1 (MQ=255)
               ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGtt                                                                                                                                         <  2:3057622/150‑1 (MQ=255)
                tctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTg                                                                                                                                        <  1:5293410/150‑1 (MQ=255)
                tctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGTTg                                                                                                                                        <  2:4177448/150‑1 (MQ=255)
                   tGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGAc                                                                                                                                     <  1:3129772/150‑1 (MQ=255)
                    gCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACt                                                                                                                                    <  1:1689547/150‑1 (MQ=255)
                     cTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCTG‑CTCCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACtgt                                                                                                                                  <  2:2556249/150‑1 (MQ=18)
                      tGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACtgt                                                                                                                                  <  2:5449371/150‑1 (MQ=255)
                       ggCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACtgtg                                                                                                                                 <  1:6172977/150‑1 (MQ=255)
                        gcgcTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTgg                                                                                                                                <  1:2645941/150‑1 (MQ=255)
                          gcTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGtt                                                                                                                                         <  2:3592622/139‑1 (MQ=255)
                            tCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCGTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGc                                                                                                                            >  1:7222803/1‑150 (MQ=255)
                              aGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCgg                                                                                                                          <  2:8148391/150‑1 (MQ=255)
                                  gTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCtgt                                                                                                                                                >  1:5429670/1‑125 (MQ=255)
                                  gTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGt                                                                                                                      <  1:6494382/150‑1 (MQ=255)
                                      ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACt                                                                                                                                    <  1:5346226/132‑1 (MQ=255)
                                      ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACt                                                                                                                                    >  2:5346226/1‑132 (MQ=255)
                                         tAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGGTGGACGGGGGGCGCGGGCGTGCCcgcg                                                                                                               >  2:5712509/1‑150 (MQ=255)
                                              gCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAggg                                                                                                          >  2:658329/1‑150 (MQ=255)
                                                 aCCGGAAACAGATCTGTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGcc                                                                                                       <  1:5713275/150‑1 (MQ=255)
                                                  ccGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCg                                                                                                      <  2:8770277/150‑1 (MQ=255)
                                                    ggAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑a                                                                                                   <  1:7315004/150‑1 (MQ=255)
                                                          aGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGc                                                                                                                    >  1:3219770/1‑128 (MQ=255)
                                                          aGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGtt                                                                                                                                         <  1:2382472/107‑1 (MQ=21)
                                                          aGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGCCCCCACGCCAACAGCACACGGATGGAAGCCGGGGCCCGTTGG‑CGGTGGGGGCGGGCGGGGCCGCCCCGGGGCCGG‑AGCCGGc                                                                                             >  1:6904117/1‑150 (MQ=255)
                                                            aTCTTTGCGCCCGGTCTGTGAAAATTGGGTTGCCAGCCACCGGCCTCTGCGCTGGCACGCCCGCTCCCACAGCCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGa                                                                                           <  1:6938187/150‑1 (MQ=25)
                                                            aTCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGa                                                                                           <  2:4004384/150‑1 (MQ=255)
                                                            aTCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑Ca                                                                                                                                            >  2:5413481/1‑102 (MQ=17)
                                                                          tCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑Ca                                                                                                                                            <  1:4453089/88‑1 (MQ=17)
                                                                          tCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑Ca                                                                                                                                            >  2:4453089/1‑88 (MQ=17)
                                                                            tgttAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACTGTCTTGGAAGCGTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCa                                                                           <  2:7466147/150‑1 (MQ=255)
                                                                              tgAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑Ca                                                                                                                                            >  2:6916133/1‑84 (MQ=17)
                                                                               taaaaaTTTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCGCAGTCCCACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGAt                                                                        <  1:1077912/149‑1 (MQ=255)
                                                                               gAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGc                                                                                                                            <  2:5674143/99‑1 (MQ=255)
                                                                               gAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGc                                                                                                                            >  1:5674143/1‑99 (MQ=255)
                                                                                aaaaaTGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATa                                                                       >  2:5038761/1‑150 (MQ=255)
                                                                                aaaaaTGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGtt                                                                                                                                         >  2:6030974/1‑85 (MQ=17)
                                                                                             cagccaCCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGtt                                                                                                                                         <  1:7057432/72‑1 (MQ=255)
                                                                                                    cGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGGGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACccacca                                                   <  1:4686704/150‑1 (MQ=255)
                                                                                                           ttCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAacac                                            <  1:3562673/150‑1 (MQ=255)
                                                                                                                        ccGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTc                                      <  2:2682570/143‑1 (MQ=255)
                                                                                                                        ccGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGcctcc                               >  1:8153240/1‑150 (MQ=255)
                                                                                                                               cacaGTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAgg                        >  1:5037661/1‑150 (MQ=255)
                                                                                                                                   gTCCAACTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGGGGCCGG‑AGCAGGCGACAGCAGTTACCGGGCAGATCGGGCCAGTCATCACCCACCAGACACACCCGTTCTGCCTCCTGCCAGGCAcc                    >  2:2182272/1‑150 (MQ=25)
                                                                                                                                      cAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGc                       >  1:8336953/1‑144 (MQ=255)
                                                                                                                                      cAACTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCGGTGGCTGGCAACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCAt                  >  2:5766072/1‑150 (MQ=18)
                                                                                                                                       aaCTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCg                >  1:3837228/1‑150 (MQ=255)
                                                                                                                                       aaCTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGAATGTGGGAGAGGGCGTGCACGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACAGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCAGTTCTGCCTCCTGCCAGGCACCATCg                >  1:4780657/1‑150 (MQ=255)
                                                                                                                                       aaCTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAgg                        <  1:1123281/142‑1 (MQ=255)
                                                                                                                                       aaCTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCg                >  2:8078531/1‑150 (MQ=255)
                                                                                                                                        aCTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCgg               >  1:7610684/1‑150 (MQ=255)
                                                                                                                                        aCTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGACACACCCGTTCTGCCTCCTGCCAGGCACCATCgg               >  1:1256637/1‑150 (MQ=37)
                                                                                                                                        aCTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCgg               >  2:6666228/1‑150 (MQ=255)
                                                                                                                                        aCTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCgg               >  2:8256867/1‑150 (MQ=255)
                                                                                                                                        aCTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCgg               >  2:3837618/1‑150 (MQ=37)
                                                                                                                                        aCTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCCGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCCTCgg               >  2:8644319/1‑150 (MQ=25)
                                                                                                                                        aCTGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCgg               >  1:1786442/1‑150 (MQ=25)
                                                                                                                                          tGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTc                                      <  2:4794130/125‑1 (MQ=255)
                                                                                                                                          tGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGACCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa             >  2:2725837/1‑150 (MQ=255)
                                                                                                                                          tGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGa                                                                                           >  2:7249238/1‑72 (MQ=11)
                                                                                                                                          tGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGa                                                                                           <  1:7249238/72‑1 (MQ=11)
                                                                                                                                          tGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGtcatc                                                           <  2:1169897/104‑1 (MQ=21)
                                                                                                                                          tGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa             >  1:7391541/1‑150 (MQ=255)
                                                                                                                                          tGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa             >  1:6668640/1‑150 (MQ=255)
                                                                                                                                          tGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa             >  2:6230196/1‑150 (MQ=255)
                                                                                                                                          tGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa             >  2:5728468/1‑150 (MQ=255)
                                                                                                                                          tGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa             >  2:463013/1‑150 (MQ=255)
                                                                                                                                          tGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa             >  2:2351487/1‑150 (MQ=255)
                                                                                                                                          tGCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa             >  2:2415666/1‑150 (MQ=37)
                                                                                                                                           gCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCa                   <  1:7955773/143‑1 (MQ=255)
                                                                                                                                           gCACAGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCCGCCAGGCACCATCGGCAt            >  1:2740154/1‑150 (MQ=37)
                                                                                                                                            cacaGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGa                                                                         <  2:1556608/88‑1 (MQ=255)
                                                                                                                                            cacaGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATc           >  2:4249383/1‑150 (MQ=37)
                                                                                                                                            cacaGGCTTCCAAGACTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATc           >  1:1177300/1‑150 (MQ=37)
                                                                                                                                             acacTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCa          <  1:523426/150‑1 (MQ=255)
                                                                                                                                               aGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACAcc                                           >  1:4329590/1‑115 (MQ=255)
                                                                                                                                               aGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACAcc                                           <  2:4329590/115‑1 (MQ=255)
                                                                                                                                                   ttGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCAcc    >  2:3940559/1‑150 (MQ=255)
                                                                                                                                                     ggAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAg  >  2:7338618/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                       
CAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTG‑CAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAG  >  NC_002947/2287617‑2287915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑