| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,397,835 | 0 | C | G | 54.5% | ‑6.6 / 11.5 | 11 | R58P (CGG→CCG) | PP_3868 | group II intron‑encoding maturase |
| Reads supporting (aligned to +/- strand): ref base C (3/2); new base G (5/1); total (8/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATT > NC_002947/4397719‑4397969 | aagaCTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTcc < 1:3341848/147‑1 (MQ=1) gtcaTGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCa < 2:2371496/147‑1 (MQ=1) gagcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCt > 1:761661/6‑105 (MQ=1) gagcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCt < 2:761661/100‑1 (MQ=1) gagcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCa > 2:7097092/6‑150 (MQ=0) agcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAt > 2:3679754/5‑150 (MQ=0) gcgggTGCTTGCACCGGCTCCATTAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAtt > 2:2890213/4‑150 (MQ=1) gcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAtt > 1:8199986/4‑150 (MQ=0) gcgggTGCTTGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAtt > 2:5707960/4‑150 (MQ=0) gcgggTGCTTGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAtt > 2:6771314/4‑150 (MQ=0) gcgggTGCTTGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAtt > 2:6771423/4‑150 (MQ=0) | AATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATT > NC_002947/4397719‑4397969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |