BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	4,953,768	Δ1 bp	coding (74/435 nt)	fliO ←	flagellar protein FliO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	4,953,765	0	G	.	99.0%	1859.9 / 10.0	389	coding (77/435 nt)	fliO	flagellar protein FliO
Reads supporting (aligned to +/- strand): ref base G (3/1); new base . (197/187); total (201/188)
Fisher's exact test for biased strand distribution p-value = 6.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 418 total aligned reads displayed.

CGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCCGGGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCC  >  NC_002947/4953616‑4953910

cGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGccgccg                                                                                                                                                   <  2:126549/150‑1 (MQ=255)

 gACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCCGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGGTGAGCCGCCgg                                                                                                                                                  >  2:5698686/1‑150 (MQ=255)

 gACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCCgg                                                                                                                                                  <  2:684994/150‑1 (MQ=255)

    aaTCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCCgggtg                                                                                                                                               >  2:2423158/1‑148 (MQ=255)

      tctcGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCCgggtggc                                                                                                                                             <  2:3331452/150‑5 (MQ=255)

      tctcGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCCgggtggc                                                                                                                                             >  2:1497845/1‑146 (MQ=255)

      tctcGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCCgggt                                                                                                                                                <  1:3526756/147‑2 (MQ=255)

       ctcGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGgct                                                                                                                                           >  1:453327/1‑150 (MQ=255)

         cgctCACCTGCCCACCCTTCCCGGCGGGGCTCTGCAGGCGCCGCAGCAGCCCGGCCAGAAAGAAGATCAGGCCCACCCCCAGCAGCAGGCCCAAGACCATCTGCGCCAGCGGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGgctgc                                                                                                                                         <  2:378390/147‑1 (MQ=255)

          gATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGgctgct                                                                                                                                        >  2:5972904/1‑150 (MQ=255)

           aTCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGctgctg                                                                                                                                       <  2:1170904/150‑1 (MQ=255)

           aTCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGctgctg                                                                                                                                       <  1:2139791/150‑1 (MQ=255)

           aTCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGctgctg                                                                                                                                       <  2:3847786/150‑1 (MQ=255)

           aTCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGctgctg                                                                                                                                       <  1:6435172/150‑1 (MQ=255)

               ccTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGt                                                                                                                                   >  2:8165538/1‑150 (MQ=255)

                cTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTg                                                                                                                                  >  2:1683278/1‑150 (MQ=255)

                    ccACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGG‑CCAAGAACATAATCCCCAGCATCCCGCCAAGACATCCAGGTTGAGGCGCCCGGGT‑GCTGCGGGCGGGGCCGc                                                                                                                             >  1:3231005/1‑150 (MQ=255)

                      aCCCTTCACAGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGcc                                                                                                                            >  2:3491239/1‑149 (MQ=255)

                        ccTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGc                                                                                                                          <  1:8583095/150‑1 (MQ=255)

                          ttCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCca                                                                                                                        <  1:4346617/150‑1 (MQ=255)

                          ttCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCca                                                                                                                        <  1:9094216/150‑1 (MQ=255)

                           ctaCTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCcag                                                                                                                       >  1:6347309/3‑150 (MQ=255)

                               tGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCcaggcag                                                                                                                   <  1:4479769/150‑1 (MQ=255)

                                gCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGTAGTTCAGGCCCACCACCAGCAGCAGGCCCAAGACCTTATGCGCCAGCTGCCCTCCAAGAGTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCcaccaggc                                                                                                                  <  2:2254286/150‑7 (MQ=255)

                                 cGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCaggcaggc                                                                                                                 <  1:383954/150‑1 (MQ=255)

                                  ggTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCg                                                                                                                <  1:368669/150‑1 (MQ=255)

                                     gCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGtgg                                                                                                             <  2:941418/150‑1 (MQ=255)

                                        ctGCAGGCGCCGCAGCCGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGtggctg                                                                                                          <  2:173441/150‑1 (MQ=255)

                                          gCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGtggctggc                                                                                                        >  2:3945915/1‑150 (MQ=255)

                                          gCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGtggctggc                                                                                                        <  2:6954112/150‑1 (MQ=255)

                                           cAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCg                                                                                                       <  2:2662416/150‑1 (MQ=255)

                                             ggCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGaa                                                                                                     <  1:2423158/150‑1 (MQ=255)

                                               cgccgcAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACa                                                                                                   <  1:1514423/150‑1 (MQ=255)

                                               cgccgcAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACa                                                                                                   <  1:7372759/150‑1 (MQ=255)

                                                  cgcAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCa                                                                                                <  2:2526179/150‑1 (MQ=255)

                                                    cagcagCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCAcc                                                                                              <  2:5279194/150‑1 (MQ=255)

                                                         gccaggccagAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGc                                                                                         >  1:7197580/1‑150 (MQ=255)

                                                               ccagAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCaggcaggc                                                                                                                 <  2:6405357/120‑1 (MQ=255)

                                                               ccagAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGc                                                                                   <  1:5436345/150‑1 (MQ=255)

                                                                cagAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCg                                                                                  >  2:8403180/1‑150 (MQ=255)

                                                                cagAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCg                                                                                  <  2:8822846/150‑1 (MQ=255)

                                                                aagaaagaaGATAAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGACGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCg                                                                                  >  1:2503397/2‑150 (MQ=255)

                                                                   aaagaaGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATg                                                                               >  2:4745293/1‑150 (MQ=255)

                                                                      gaagaTCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGgcg                                                                            >  1:798222/1‑150 (MQ=255)

                                                                       aagaTCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGgcgc                                                                           >  2:8274073/1‑150 (MQ=255)

                                                                        agaTCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGtggct                                                                                                           >  1:3031205/1‑117 (MQ=255)

                                                                            cAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGCACAGCACCGCTGCCGCAGCGATGGCGCGCATc                                                                      >  2:7944314/1‑150 (MQ=255)

                                                                             aGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCg                                                                     >  1:4669758/1‑150 (MQ=255)

                                                                                 ccaccaccaGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGcc                                                                 >  2:4251043/1‑150 (MQ=255)

                                                                                 ccaccaccaGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGcc                                                                 >  1:8626737/1‑150 (MQ=255)

                                                                                 ccaccaccaGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGcc                                                                 >  1:538260/1‑150 (MQ=255)

                                                                                  caccaccaGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCTAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGccc                                                                <  2:6515100/150‑1 (MQ=255)

                                                                                    ccaccaGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCtt                                                              >  2:3003208/1‑150 (MQ=255)

                                                                                     caccaGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTc                                                             >  2:3240957/1‑150 (MQ=255)

                                                                                      accaGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCa                                                            <  1:8030047/150‑1 (MQ=255)

                                                                                      accaGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCa                                                            <  1:6047293/150‑1 (MQ=255)

                                                                                      accaGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCa                                                            <  1:4625096/150‑1 (MQ=255)

                                                                                                 gCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGc                                                 >  1:8403479/1‑150 (MQ=255)

                                                                                                  cccAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGct                                                >  1:5189849/1‑150 (MQ=255)

                                                                                                   ccAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAAc                                                                                                    <  2:2152046/97‑1 (MQ=255)

                                                                                                   ccAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGc                                                                                         >  1:8959174/1‑108 (MQ=255)

                                                                                                   ccAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGc                                                                                         <  2:8959174/108‑1 (MQ=255)

                                                                                                   ccAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGctt                                               >  1:1089636/1‑150 (MQ=255)

                                                                                                    cAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCa                                                                                                                            <  2:9458074/72‑1 (MQ=255)

                                                                                                    cAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCa                                                                                                                            >  1:9458074/1‑72 (MQ=255)

                                                                                                    cAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGcttc                                              <  2:7261342/150‑1 (MQ=255)

                                                                                                    cAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGcttc                                              >  2:1091228/1‑150 (MQ=255)

                                                                                                     aaGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGcttct                                             <  1:4073622/150‑1 (MQ=255)

                                                                                                        aCCCTCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGa                                          <  2:6714205/150‑1 (MQ=255)

                                                                                                         ccATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGAt                                         >  1:9237019/1‑150 (MQ=255)

                                                                                                          cATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATa                                        <  2:4669753/150‑1 (MQ=255)

                                                                                                            tCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGAt                                                                                <  1:2092204/108‑1 (MQ=255)

                                                                                                            tCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACg                                      >  1:6629059/1‑150 (MQ=255)

                                                                                                            tCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACg                                      >  1:6942796/1‑150 (MQ=255)

                                                                                                                 gcCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGc                                 <  1:4745293/150‑1 (MQ=255)

                                                                                                                  ccAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCt                                >  1:8840263/1‑150 (MQ=255)

                                                                                                                  ccAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCt                                <  1:2683152/150‑1 (MQ=255)

                                                                                                                   cAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCtt                                                              <  2:3610761/119‑1 (MQ=255)

                                                                                                                   cAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTg                               <  1:1683278/150‑1 (MQ=255)

                                                                                                                   cAGCTGCCCGCCAAGACTGCCAGGCTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTg                               >  1:2841181/1‑150 (MQ=255)

                                                                                                                    aGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTgg                              <  2:2984638/150‑1 (MQ=255)

                                                                                                                    aGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTgg                              >  2:2747385/1‑150 (MQ=255)

                                                                                                                      cTGCCCGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTgggg                            <  2:2879800/150‑1 (MQ=255)

                                                                                                                         cccGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGc                                                                                                                                <  2:1967958/47‑1 (MQ=255)

                                                                                                                         cccGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTg                         <  1:8157314/150‑1 (MQ=255)

                                                                                                                          ccGCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGa                        <  1:3945915/150‑1 (MQ=255)

                                                                                                                            gCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATc                      >  1:5338868/1‑150 (MQ=255)

                                                                                                                            gCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATc                      >  2:7129703/1‑150 (MQ=255)

                                                                                                                            gCCAAGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATc                      >  2:4995550/1‑150 (MQ=255)

                                                                                                                                aGACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGt                  <  1:2247373/150‑1 (MQ=255)

                                                                                                                                 gACTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTc                 >  2:9134938/1‑150 (MQ=255)

                                                                                                                                  aCTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTggg                             >  2:862198/1‑137 (MQ=255)

                                                                                                                                   cTGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCgg               <  2:4559155/150‑1 (MQ=255)

                                                                                                                                    tGCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGt              >  1:777547/1‑150 (MQ=255)

                                                                                                                                     gCCAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTc             >  1:595053/1‑150 (MQ=255)

                                                                                                                                       cAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAg           >  2:617428/1‑150 (MQ=255)

                                                                                                                                       cAGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAg           >  2:6214677/1‑150 (MQ=255)

                                                                                                                                        aGGTTGAGCCGCC‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAgg          >  1:1244330/1‑150 (MQ=255)

                                                                                                                                               gccgcc‑GGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGc   <  2:7605913/150‑1 (MQ=255)

                                                                                                                                                ccgcc‑gGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGcc  <  2:3042665/150‑1 (MQ=255)

CGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGGCCCACCACCAGCAGCAGGCCCAAGACCATCTGCGCCAGCTGCCCGCCAAGACTGCCAGGTTGAGCCGCCGGGGTGGCTGCTGGCGTGGCCGCAGCCAGGCAGGCGTGGCTGGCGAACAGCACCGCTGCCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCC  >  NC_002947/4953616‑4953910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`