Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,745,4760AT36.3% 193.0 / 209.8 229intergenic (+36/+35)hutF/PP_5037formiminoglutamate deiminase/lipocalin family lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (51/79);  new base T (33/41);  total (85/144)
Fisher's exact test for biased strand distribution p-value = 4.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.66e-03
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 237 total aligned reads displayed.

CAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGT  >  NC_002947/5745327‑5745624
                                                                                                                                                      |                                                                                                                                                    
cAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCaa                                                                                                                                                      <  2:6066548/150‑1 (MQ=255)
   gTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGcc                                                                                                                                                   >  2:3981025/1‑150 (MQ=255)
    tGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGccc                                                                                                                                                  <  1:90874/150‑1 (MQ=255)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACTGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGaa                                                                                                                                             <  1:6759041/150‑1 (MQ=39)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGaa                                                                                                                                             <  2:3844873/150‑1 (MQ=255)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGGGCTTGCACGCGaa                                                                                                                                             <  2:819901/150‑1 (MQ=255)
          cggtgATGGTGCAGGGGCAATGGGTGGGGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTGTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGGGCTTGCACGCGAAg                                                                                                                                            <  2:187778/148‑1 (MQ=38)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAg                                                                                                                                            <  2:5612333/150‑1 (MQ=255)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAg                                                                                                                                            <  2:4178047/150‑1 (MQ=255)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAg                                                                                                                                            <  2:4459475/150‑1 (MQ=39)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAg                                                                                                                                            <  1:6174651/150‑1 (MQ=39)
           tgtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGaa                                                                                                                                             <  2:7953481/148‑1 (MQ=255)
           tgtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGaa                                                                                                                                             >  1:7953481/1‑148 (MQ=255)
           tgtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAgg                                                                                                                                           <  2:199538/150‑1 (MQ=255)
            gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACTGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAggg                                                                                                                                          <  1:3210526/150‑1 (MQ=38)
            gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAggg                                                                                                                                          <  2:1864150/150‑1 (MQ=39)
            gtgATGGTGAAGGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAggg                                                                                                                                          <  2:5196740/150‑1 (MQ=255)
              gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGGAGCCCGTCGCGTGCCAGCCCCCGAAAGGtt                                                                                                                                        >  2:7856794/1‑150 (MQ=255)
              gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGtt                                                                                                                                        <  1:1537286/150‑1 (MQ=255)
              gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCAGGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgggct                                                                                                                                        <  2:45622/150‑3 (MQ=38)
               aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGGGGTTGAGGCCCGCCGCGGGCAGCCCCCCCAAGGGtg                                                                                                                                        >  2:486528/1‑149 (MQ=255)
               aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg                                                                                                                                       <  1:6006220/150‑1 (MQ=255)
               aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg                                                                                                                                       <  1:1088907/150‑1 (MQ=255)
                 ggTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTgca                                                                                                                                     <  1:3981025/150‑1 (MQ=255)
                  gTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGaa                                                                                                                                             >  1:8496341/1‑141 (MQ=255)
                   tGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTgcaac                                                                                                                                   <  2:3051608/150‑1 (MQ=255)
                   tGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGGGCTTGCACGCGAAGGGCTgcaac                                                                                                                                   <  1:9585434/150‑1 (MQ=38)
                    gactGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTgcaacg                                                                                                                                  <  1:5767814/147‑1 (MQ=255)
                      aTGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAg                                                                                                                                            <  1:1847699/138‑1 (MQ=255)
                       tGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTgcaacgcaa                                                                                                                               <  2:1283379/150‑1 (MQ=255)
                               gggTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg                                                                                                                                       <  1:4350784/134‑1 (MQ=255)
                                 gtggtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgggct                                                                                                                                        >  2:9150012/1‑129 (MQ=38)
                                 gtggtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgggct                                                                                                                                        <  1:9150012/131‑3 (MQ=38)
                                     tgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGGGCTTGCACGCGAAGGGCTg                                                                                                                                       >  1:2480834/1‑128 (MQ=38)
                                      gcgcCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GGGGTTCGGCCCATACCCTGCCAGCCCCCCAAGGGGTGCAAACCAACCCCcaaaaaaaaag                                                                                                                >  2:673368/1‑145 (MQ=255)
                                       cgcCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GGGTTTCAGCCCAACGCGTGCAACCCCCCCAACGGTTTCAACGCAAACCCAAAAAAcacact                                                                                                               >  2:8678456/1‑148 (MQ=255)
                                                cggcATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCACGTTTTTCCGCCACCTTTTGGCCTGAGCGTACCGGGGTT‑GCGTTCCACCCCTCCCCGTGAAAGCCCGCGAAGGGTAGAAACGCAACCCCAAAAAACTCAGTGCATTTTTa                                                                                                      <  2:6231882/150‑1 (MQ=255)
                                                        cccgtaaGATGACCGGGGGGGGGCGTTGGCCACGGTGTTGCGCCCGCTTGGGGGGTGCGCGTCCGGGGGTG‑GCGTTGCAGCCCTGCGGGGGCACGCCCGCGATGGTTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGc                                                                                              <  2:1709734/145‑1 (MQ=255)
                                                        ccAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGtt                                                                                                                                        >  1:3289559/1‑108 (MQ=255)
                                                        ccAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGtt                                                                                                                                        >  1:8119862/1‑108 (MQ=255)
                                                        ccAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGtt                                                                                                                                        <  2:8119862/108‑1 (MQ=255)
                                                         cAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGATGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCt                                                                                             <  2:4466907/150‑1 (MQ=255)
                                                             aaGATCAACGCGGGGGGGCGTTTGCCAGGGTGTTGCCCCCGCTTTTGGGCTGCGCGTCCGGGGGTT‑GCGTGGCCCCCGTGGGGGTGAACGCCCGCGATGGTTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATc                                                                                         <  2:117604/150‑1 (MQ=255)
                                                                            gggcgTTGGCCAGGGTGTTGCGCCAGCTTTGGGGCTGAGGTTACGGGGGTG‑GGGTTGCCGCCCTTGGCGTCCACGCCCGCGACGGGTTGCACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                          <  2:1072735/150‑1 (MQ=255)
                                                                            gggcgTGGGCCCCGGTGTTGCGCCCGCTTTGGGGCTGCGGGGCCGGGGGTG‑GCGTTGCCGCCCGGCGCGGGCCCGCCCGCGACGGGTGGCACCGCAACCCCAAACAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                          <  2:7340940/150‑1 (MQ=255)
                                                                                     ccAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAGGGCTg                                                                                                                                       <  2:5283247/80‑1 (MQ=18)
                                                                                     ccAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAGGGCTg                                                                                                                                       >  1:5283247/1‑80 (MQ=18)
                                                                                      catggTGTGGCGCCCGCTTTGGGGCTGCGCGTACGGGGGTG‑GCGTGGCAGCCCGTCGGGTGCCCGCCGGCGACGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTg                                                                <  1:7040447/147‑1 (MQ=255)
                                                                                      cAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACGGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGATGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTg                                                                <  1:7910953/150‑1 (MQ=255)
                                                                                       aaGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCaa                                                                                                                                                      <  1:1771738/63‑1 (MQ=255)
                                                                                          gtgtTGCGCCAGCTTTGGGGCTGTGCGTACGGGGGTG‑GCGTTGCCGCCCTTCGCGTGAACGCCCGCGACGGGTTGCACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgtgt                                                            <  1:7837377/150‑1 (MQ=255)
                                                                                            gtTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGtt                                                                                                                                        <  1:1722654/72‑1 (MQ=255)
                                                                                               gcgcCTGCTTTTGGGCTGTGCGTACGGGGGTT‑GCGTTGCAGCCCTTCGCGTGCACGCCCGCTATGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATAc                                                       <  1:4718959/150‑1 (MQ=255)
                                                                                                   cAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgg                                                                                                                                           >  1:1223640/1‑62 (MQ=14)
                                                                                                   cAGCTTTTGGGCGGTGCGTACGGGGGTT‑GCGTTGCAGCCCTGCGGGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCct                                                   <  2:7237254/150‑1 (MQ=255)
                                                                                                           gggCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTGCGCGTGCACGCCCGCGACGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcgc                                           <  2:5916586/150‑1 (MQ=255)
                                                                                                              cTGAGCGTACGGGGGTT‑GCGTTGCAGCCCTCCGCGTGAACGCCCGCGACGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGcc                                        <  2:3378227/150‑1 (MQ=255)
                                                                                                                   cGTCCCGGGGGG‑GCGGTGCAGCCCGGCGCGGGCAAGCCCGCGACGGGTTGCACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa                                   <  2:8900539/150‑1 (MQ=255)
                                                                                                                     gtgcGGGGTT‑GGGTTGCTGCCCTTCGCGTGCACGCCCGCGCTGGGTTGCTACGCAACCCCAAAAAACTCAGTGCTTTTTTACTTTTTGCTGATCGGAGGCCCGCCTGATCAAGCGGCTGGTGTCTTACCCCTGCTGCCGCGCCCTGGAca                                 <  2:780052/147‑1 (MQ=255)
                                                                                                                        gggggTT‑GGTTTGCCGCCCTTGGCGTGCAAGCCCGCTATGGTTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagca                              <  1:2116935/149‑1 (MQ=255)
                                                                                                                          gggTT‑GCGTTGCCGCCCTTGGCGTGCACGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAgg                            <  2:3584642/150‑1 (MQ=255)
                                                                                                                          gggTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAgg                            <  2:6510523/150‑1 (MQ=255)
                                                                                                                            gtt‑gcgttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGtt                          >  2:7057172/1‑150 (MQ=255)
                                                                                                                               ggcgttgcCGCCCTTCGCGTGCACGCCCGCGACGGGTTGCACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtct                        <  2:2116917/149‑1 (MQ=255)
                                                                                                                                 cgttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa                      >  2:7301436/1‑150 (MQ=255)
                                                                                                                                  gttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTgg                                                               <  2:9394972/108‑1 (MQ=255)
                                                                                                                                  gttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTgg                                                               >  1:9394972/1‑108 (MQ=255)
                                                                                                                                  gttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc                     >  2:5251581/1‑150 (MQ=255)
                                                                                                                                    tgcAGCCCTGCGCTTCAACCCCCGAGATGGGTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGc                   <  1:7465132/150‑1 (MQ=255)
                                                                                                                                     gcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCt                  >  2:9041742/1‑150 (MQ=255)
                                                                                                                                      caacccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATc                                                                                         <  2:3259762/75‑1 (MQ=17)
                                                                                                                                      caacccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCt                                      >  2:2279312/4‑129 (MQ=37)
                                                                                                                                      caacccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc                 >  2:2812157/4‑150 (MQ=38)
                                                                                                                                       cgCCCTTCGCGTGCACGCCCGCGATGGGTTGCACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                <  2:1771366/149‑1 (MQ=255)
                                                                                                                                       aacccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTCTTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCGGGACAGCAGGTTCTCACGCTcc                >  1:17833/3‑150 (MQ=38)
                                                                                                                                       aacccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                          >  2:6216849/3‑92 (MQ=21)
                                                                                                                                       aacccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa                      >  2:1842745/3‑144 (MQ=38)
                                                                                                                                       aacccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                >  2:3489982/3‑150 (MQ=38)
                                                                                                                                       aacccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                >  1:1326724/3‑150 (MQ=38)
                                                                                                                                       aacacTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCGAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                >  2:8051631/5‑150 (MQ=38)
                                                                                                                                       aGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc                                             <  2:3301135/121‑1 (MQ=255)
                                                                                                                                        gCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTccc               >  1:2241869/1‑150 (MQ=255)
                                                                                                                                        acccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTccc               >  1:7103034/2‑150 (MQ=39)
                                                                                                                                         cccTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTAGTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa              >  2:5479059/1‑150 (MQ=255)
                                                                                                                                         cccTTCGCGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa              >  2:3103554/1‑150 (MQ=255)
                                                                                                                                         cccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctc                       >  2:442543/1‑141 (MQ=38)
                                                                                                                                         cccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctc                       <  1:442543/141‑1 (MQ=38)
                                                                                                                                         cccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa              >  1:5403889/1‑150 (MQ=39)
                                                                                                                                           cTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCATGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg            >  2:406008/1‑150 (MQ=255)
                                                                                                                                           cTTCGCGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg            >  1:4036663/1‑150 (MQ=255)
                                                                                                                                           cTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg            >  2:7652472/1‑150 (MQ=39)
                                                                                                                                            ttCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc           >  1:5558515/1‑150 (MQ=255)
                                                                                                                                            ttCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGGGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc           >  2:237722/1‑150 (MQ=255)
                                                                                                                                            ttCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCGAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc           >  2:1450590/1‑150 (MQ=39)
                                                                                                                                            ttCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc           >  2:4264354/1‑150 (MQ=39)
                                                                                                                                             tCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGtt                          >  1:3367932/1‑134 (MQ=255)
                                                                                                                                              cgcgTGCAAGCCCGCGATGGTTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCg         <  1:3142110/150‑1 (MQ=255)
                                                                                                                                                 gcgCACGCCCGCGCCGGGTTGCCACGCAACCCCAAAACACTCCCGGCATTTTTACTATTTGCTGAACGGACGCCCGCCAGATCACGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa      <  1:3057558/148‑1 (MQ=255)
                                                                                                                                                   gCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt                                                              <  1:3832119/92‑1 (MQ=255)
                                                                                                                                                     aaGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAgtgt  >  1:7255550/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                    
CAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGT  >  NC_002947/5745327‑5745624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑