Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,471,8330TG25.8% 674.0 / 79.0 387intergenic (‑16/+108)PP_3081/PP_5560hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (59/206);  new base G (83/9);  total (172/215)
Fisher's exact test for biased strand distribution p-value = 8.08e-32
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 398 total aligned reads displayed.

CGTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTC  >  NC_002947/3471686‑3471981
                                                                                                                                                   |                                                                                                                                                    
  tACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGgcg                                                                                                                                                   >  2:6927604/1‑149 (MQ=255)
    ccTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgcggc                                                                                                                                                 <  2:567364/149‑1 (MQ=255)
    ccTGCGGGCAGGGTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgcggc                                                                                                                                                 <  2:7266511/149‑1 (MQ=255)
      tGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGcggcgg                                                                                                                                               <  1:549519/149‑1 (MQ=255)
      tGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGcggcgg                                                                                                                                               <  1:3437044/149‑1 (MQ=255)
      tGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGcggcgg                                                                                                                                               <  1:7895968/149‑1 (MQ=255)
      tGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGcggcgg                                                                                                                                               <  1:6007180/149‑1 (MQ=255)
        cGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCCCCGGCGGGGGcc                                                                                                                                             >  1:1123562/1‑149 (MQ=255)
         gggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGCAGGCGGCCa                                                                                                                                            <  1:7755494/149‑1 (MQ=255)
          ggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAAAGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCaa                                                                                                                                           <  2:2823033/149‑1 (MQ=255)
                ttGTCCCAGCTCTGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCGGGGTCCTGGCGGACCTGTTGCCGGGCAATGACGCCGCCATCTGTGAACGACGAGGACCTGACCGACATCGCGCCTTGGCGGCCTGCGGCGGCCAACGCtgt                                                                                                                                     <  2:7948778/149‑1 (MQ=255)
                    cccAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCAGTGCAg                                                                                                                                 >  2:5481606/1‑149 (MQ=255)
                     cccgCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCCATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCCGCCGCGGCCCACCCGGTGCAgg                                                                                                                                >  2:6163992/4‑149 (MQ=255)
                     ccAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAgg                                                                                                                                <  2:9054840/149‑1 (MQ=255)
                     ccAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAgg                                                                                                                                <  2:7417181/149‑1 (MQ=255)
                     ccAGCTCAGTTGCGGGGTCCGCTCTTAACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCAATCATTGAAACACGAGCAAATGACCGACATCGCGCCTTGCCCCCCTGCGGCGGCCAACGCTGTGCAgg                                                                                                                                <  1:4475785/149‑1 (MQ=255)
                      cAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGACCTGACCGACATCGCGCCTTGGCCGCCCGCGGCGGCCCACCCGGTGCAcgg                                                                                                                               >  2:2276679/1‑149 (MQ=255)
                      cAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCGCCCGCGGCGGCCCACCCAGTGGAggg                                                                                                                               >  1:2651916/1‑149 (MQ=255)
                      cAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACGCGGTGCAggg                                                                                                                               >  1:1336886/1‑149 (MQ=255)
                       aGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCGCCAGCGGCGGCCAACCCGGTTCAGGgc                                                                                                                              >  1:711093/1‑149 (MQ=255)
                        gCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGgca                                                                                                                             <  2:4349562/149‑1 (MQ=255)
                         cTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACCCGGTGCAGGgccg                                                                                                                            >  1:2755493/1‑147 (MQ=255)
                         cTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGCCAACGCGGTGGAGGgcag                                                                                                                            >  1:2099706/1‑149 (MQ=255)
                          tCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGCCAAACCTGGGCAGGgcccc                                                                                                                           >  1:4945510/1‑146 (MQ=255)
                             tttGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCTGGGCAATGACGCCGCCATCAGTGAAATACGAGTAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCaaa                                                                                                                        <  1:4406028/148‑1 (MQ=255)
                              ttGCGGGGTCCGCTCTTCACCGGCCCCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGAAATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAag                                                                                                                       <  1:629818/149‑1 (MQ=255)
                               tGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGACAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCCACGCGGGGCAGGGCAGCACagc                                                                                                                      >  2:5951744/1‑149 (MQ=255)
                               tGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCGGTGCAGGGCCGCAAagc                                                                                                                      >  1:3200736/1‑149 (MQ=255)
                                 cGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCAGTGCAGGGCAGCAAagcag                                                                                                                    >  2:4183116/1‑149 (MQ=255)
                                  ggggTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCGGCCGCGGCCAACCCGGTGGAGGGCAGCACagccgc                                                                                                                   >  1:4312600/1‑149 (MQ=255)
                                    ggTCCGGTCTTCACCGGCACGGCATGCCGGGTCCTGGCGGACCTGGTGCAGGGCAATGACGCCGCCATCTGTGAAAGACGAGGAACTGACCGACATCGCGCGTTGGCCGCGTGCGGGGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGa                                                                                                                 <  2:5317506/149‑1 (MQ=255)
                                    ggTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGa                                                                                                                 <  2:3675188/149‑1 (MQ=255)
                                       ccGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACCCGGGGCCGGGCCGCAAAGCAGCGcaca                                                                                                              >  2:3169381/1‑149 (MQ=255)
                                        cGCTCTACACCGGCACCGAATGCCGGGTCCTGGCCCACCTTTTGCAGGCCAATCACGCCGCAAACAGTTAAACACTAGTAACTCACCCACATCGCGCCTTGGCCGCCTGCGGCGCCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAg                                                                                                             <  1:1949210/149‑1 (MQ=255)
                                            ctTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAg                                                                                                         >  2:6475008/1‑149 (MQ=255)
                                             ttCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAgt                                                                                                        >  1:7534920/1‑149 (MQ=255)
                                                 ccGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACGCGGTGGCGGGCAGCAAACCCGCCAACACCCACAGTCt                                                                                                    >  1:6870431/1‑149 (MQ=255)
                                                 ccGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACGCGGTGCAGGGCCGCCAAGCAGCGAACAGCCCgtgtgt                                                                                                    >  1:9028818/1‑147 (MQ=255)
                                                  cGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCTGGGCCGGGCCGCAAAGCAGCGAACAGCCCGTGTCTg                                                                                                   >  2:4525397/1‑149 (MQ=255)
                                                    gCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACGCAGTGCAGGGCCGCAAATCAGCGAACAGCCAGTGTCTGAg                                                                                                 >  2:4553541/1‑149 (MQ=255)
                                                     cACCGCTTGCGGGGTCCTGGCCGACTTGTTGCTGGGCATTGACGCCGCCATCTGTGAAAGAGGAGGAACTGACCGACAGCGCGCGTTGGCCGCGTGGGGGGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAgg                                                                                                <  1:291384/149‑1 (MQ=255)
                                                       ccGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGTAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTg                                                                                              <  1:730899/149‑1 (MQ=255)
                                                       ccGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCGCCGGCGGCGGCCCACGCCGTGCCGGGCCGCAAAACACCCAACACCCACGGTCTgtggtg                                                                                              >  1:4129130/1‑149 (MQ=255)
                                                         gCATGCCGGGGCCGGGCCGACCTGTGGCCGGGCACTGACGCCGCCATCAGTGAAAGACGCGGACCTGACCGACATCGCGCCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCa                                                                                            <  2:836267/149‑1 (MQ=255)
                                                             gCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCGGCGGCGGCCCACGCGGTGCAGGGCAGCACAGCAGCGACCAGGCAGGGTCTGTGGTGCCTggg                                                                                        >  2:4993148/1‑148 (MQ=255)
                                                               cGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCa                                                                                      <  2:7209580/149‑1 (MQ=255)
                                                                gggTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCGGCGGCGGCCCACCCTGTGCAGGGCAGCAAAGCAGCGAACACCCACTGTCTGAGGTGCATGGGCaa                                                                                     >  2:4749311/1‑149 (MQ=255)
                                                                 ggTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAAt                                                                                    <  2:1975759/149‑1 (MQ=255)
                                                                    ccTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCt                                                                                 <  2:5850167/149‑1 (MQ=255)
                                                                      tGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCCGGCGCCCCCGCCGGGCAGGGCGCCAAAACACCGAACACCCCAGGTCTTAGGGGGGTGGTCaaaacatt                                                                               >  1:199617/1‑143 (MQ=255)
                                                                        gCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCATGGc                                                                             >  2:5072091/1‑149 (MQ=255)
                                                                         ccGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCa                                                                            <  2:5072662/149‑1 (MQ=255)
                                                                         ccGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGCCAACGCGGTGCCGGGCAGCAAAGCAGCCACCAGCCAGTGTCTGAGGTGCAAGGTCCATCCTTGGCa                                                                            >  2:6695646/1‑149 (MQ=255)
                                                                              cTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCGCCGGCGGCGGCCAACCCTGTGGACGGCAGCAAAGCAGCGAACACCCACGGTGTGATGTTCATTGTCAATCCATGGCAGGGCg                                                                       >  1:8188087/1‑149 (MQ=255)
                                                                              cTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCg                                                                       <  2:1224104/149‑1 (MQ=255)
                                                                               tGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGt                                                                      <  2:3961139/149‑1 (MQ=255)
                                                                               tGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCGGTTCAGGGCAGCAAAGCAGCGAACAGCCAGTGGGTGAGGTGCATGGTCAAACCTTTGCAGGGCGt                                                                      >  1:6740330/1‑149 (MQ=255)
                                                                                  tGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCCCGCGGTGCAGGGCAGCAAAGCAGCGAACAGCCACGGTCTGAGGTGCATGGTCAATACTTGGCAGGGCGGCAc                                                                   >  1:846340/1‑149 (MQ=255)
                                                                                    cAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCCACGCGGTGCAGGGCAGCAAAGCAGCGAACACCCCGGGTCTGAGGTGCATGGTCAATACGTTGCAGGGCGTCACgg                                                                 >  2:8585956/1‑149 (MQ=255)
                                                                                    cAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTTCAGGGCCGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGGCTGGTCAATCCATGGCAGGGCGTCACgg                                                                 >  2:3746376/1‑149 (MQ=255)
                                                                                     aGGGAAATGACGCCGCCATCCGTCAAACACGAGTAACTGACCCACATCGCGCCTGGGCCGCCTGGGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGc                                                                <  1:1502921/149‑1 (MQ=255)
                                                                                         caaggccgccgcCCTCCGTGAAAGCCGAGGAACTGCCCGACACGGCGCCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAg                                                            <  2:7644348/143‑1 (MQ=255)
                                                                                         cAATGACGCCGCCATCTGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAg                                                            <  2:4800592/149‑1 (MQ=255)
                                                                                          aaTGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGt                                                           >  2:8720120/1‑149 (MQ=255)
                                                                                           aTGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCCGCGGCGGCCCACGCGGTGCAGGGCCGCCAAGCACCGAACAGCCACGGTCGGGGGTGCCAGGTCAAAACATGGCCGGGCCTCACCGcgccggc                                                          >  2:147913/1‑143 (MQ=255)
                                                                                            tGACGCCGCCATCAGTGAACGACGCGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCt                                                         <  1:5794391/149‑1 (MQ=255)
                                                                                              aCGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACCCTGTGCAGGGCAGCAAAGCACCGAACACCCAGTGTCTGAGGTGCATGGTCAATACGTGGTTGGGCGTCACGGCGCAGTCTAg                                                       >  2:3280876/1‑149 (MQ=255)
                                                                                                    ccATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAgg                                                 <  1:2200293/149‑1 (MQ=255)
                                                                                                    ccATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAgg                                                 <  2:4623887/149‑1 (MQ=255)
                                                                                                       tCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACCCGGTGCCGGGCCGCAAAGCAGCGAAAACCCAGGGTCTGGGGTGCCAGGTCAATACATGGCAGGGCGTCACGGCGCAGTCTAGCCCAGGTCt                                              >  2:2553515/1‑149 (MQ=255)
                                                                                                       tCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCCGCGGCGGCCCACCCGGTGGCGGGCACCAAAACACCCAACACCCCGGGGCGGGGGTGCCTGGGGCAACCGTGGCCGGGCGTCACGGCTCAGTCTAGCCCACGtgt                                              >  2:3004357/1‑147 (MQ=255)
                                                                                                        ctgTGAAAGACGTGTAAGTGACCGACATCGCGCGTGGGCCGCGTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTg                                             <  1:5302557/147‑1 (MQ=255)
                                                                                                          gTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCCGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCt                                           >  2:8297056/1‑149 (MQ=255)
                                                                                                             aaaGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCa                                        <  2:2029182/149‑1 (MQ=255)
                                                                                                             aaaGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCGGCGGCGGCCAACCCGGTGCAGGGCAGCCAACCCGCGAAAAGCCCCGGTCTGTGGTGCATGGTCAAAACGTGGCCGGGCGGCACCGCGCAGGCTAGCCCCGCTCGGCttac                                        >  2:1034949/1‑147 (MQ=255)
                                                                                                              aaGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAg                                       <  2:1644530/149‑1 (MQ=255)
                                                                                                              aaGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAg                                       <  1:7955589/149‑1 (MQ=255)
                                                                                                               aGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCAGCGGCGGCCCACGCGGTGCAGGGGCGCAAAGCAGCGCACACCCCGGGTCTGGGGTGGAAGGTCAATACGTGGCCCGGCGTCACGGCGCAGGCGATCCCACGTCTGCTGCAGc                                      >  2:2652781/1‑149 (MQ=255)
                                                                                                                gACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCg                                     <  2:220514/149‑1 (MQ=255)
                                                                                                                gACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGCCAAAGCGGTGCAGGGCAGCAAAACACCGAACAGCCAGTGTCTGAGGTGCCTGGTCAAAACATGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCg                                     >  2:4932763/1‑149 (MQ=255)
                                                                                                                  cGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGc                                   <  2:3235881/149‑1 (MQ=255)
                                                                                                                  cGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGCCAACCCTGTGCAGGGCAGCCAAGCAGCGAACAGCCACTGTCTGAGGTGCATGGTCAATACATGGCAGGGCGTCACCGCTCAGTCTAGCCCACGTCTGCTTCAGCCGc                                   >  2:7788312/1‑149 (MQ=255)
                                                                                                                      gAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTc                               <  2:3264296/149‑1 (MQ=255)
                                                                                                                      gAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCGGTGCAGGGCAGCCAAGCAGCGCACAGCCCGGGTCGGAGGTGCAGGGTCAAACCGTGGCAGGGCGTCACGGCGCAGTCTAGCCCAGGTCTGCTTCCGCGGCTGTc                               >  2:8865128/1‑149 (MQ=255)
                                                                                                                               gACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTc                      <  2:1788729/149‑1 (MQ=255)
                                                                                                                               gACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTc                      <  2:1849852/149‑1 (MQ=255)
                                                                                                                                aCATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCg                     <  2:3499857/149‑1 (MQ=255)
                                                                                                                                    cgcgCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAg                 <  1:1277982/149‑1 (MQ=255)
                                                                                                                                          ttGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTc           <  2:8464945/149‑1 (MQ=255)
                                                                                                                                           tGGCCGCCGCAGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTcc          >  1:2496902/1‑149 (MQ=255)
                                                                                                                                           tGGCCGCCGCAGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTcc          >  2:294558/1‑149 (MQ=255)
                                                                                                                                           tGGCCGCCGCAGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTCTCCTGGTCCTCGGCAGTGCCTcc          >  1:8807480/1‑149 (MQ=255)
                                                                                                                                               cgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTg      >  2:231001/1‑149 (MQ=255)
                                                                                                                                               cgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTg      >  2:7875763/1‑149 (MQ=255)
                                                                                                                                               cgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTg      >  2:8035845/1‑149 (MQ=255)
                                                                                                                                               cgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTg      <  1:3790384/149‑1 (MQ=255)
                                                                                                                                               cgccGGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTg      <  1:4689662/149‑1 (MQ=255)
                                                                                                                                                  cTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCt   >  1:8736920/1‑149 (MQ=255)
                                                                                                                                                   tGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTc  <  1:1532907/149‑1 (MQ=255)
                                                                                                                                                   tGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTc  <  1:3606802/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
CGTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTC  >  NC_002947/3471686‑3471981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑