| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,394,808 | 0 | C | G | 65.2% | ‑6.8 / 16.7 | 23 | R58P (CGG→CCG) | PP_3868 | group II intron‑encoding maturase |
| Reads supporting (aligned to +/- strand): ref base C (8/0); new base G (14/1); total (22/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATT > NC_002947/4394724‑4394942 | accgaaaTGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTg > 2:1099433/7‑150 (MQ=1) aagcACGCGTTGATACGCACGCCTGAGGTTGTCAGGTGCAAGCAAACGCTCCATCAGCGTGTCAGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGAACTGTCAGGCGTCACCCTAGGCTTCTGGCCGGAGCTCGGGAt > 2:15666212/4‑150 (MQ=1) ggagcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGc > 1:5035461/7‑150 (MQ=1) ggagcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGc > 2:12388352/7‑150 (MQ=1) ggagcgggTGCTTGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCGGTGGGACATTTCTGc > 2:332691/7‑150 (MQ=1) gagcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCa > 1:2018689/6‑150 (MQ=0) gagcgggTGCTTGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCa > 1:18399370/6‑150 (MQ=0) gagcgggTGCTTGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCa > 1:17214910/6‑150 (MQ=0) agcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCt < 1:481377/142‑1 (MQ=0) agcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCt > 2:481377/5‑146 (MQ=0) agcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAt > 1:3004626/5‑150 (MQ=0) agcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAt > 2:9750210/5‑150 (MQ=0) agcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAt > 2:4279942/5‑150 (MQ=0) agcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAt > 2:15464269/5‑150 (MQ=0) agcgggTGCTTGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAt > 2:13671010/5‑150 (MQ=0) agcgggTGCTTGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAt > 2:13671976/5‑150 (MQ=0) agcgggTGCATGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCAGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAt > 2:15464172/5‑150 (MQ=0) gcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAtt > 2:9872575/4‑150 (MQ=0) gcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAtt > 2:11773779/4‑150 (MQ=0) gcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAtt > 2:11773529/4‑150 (MQ=0) gcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAtt > 1:3980369/4‑150 (MQ=0) gcgggTGCTTGCACCGGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCGGTGGGAAATTTCTGCAtt > 1:5634609/4‑150 (MQ=1) gcgggTGCTTGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCAtt > 1:1265838/4‑150 (MQ=0) | ACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATT > NC_002947/4394724‑4394942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |