New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 699510	23 (0.190)	10 (0.120) +AATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTAT	9/180	4.1	25.9%	noncoding (77/77 nt)	PP_t05	tRNA‑Ile
	?	NC_002947	= 5312869	61 (0.500)					noncoding (1/76 nt)	PP_t51	tRNA‑Ala
Rejected: Coverage evenness skew score above cutoff.

AAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTGGGCAGATTTGAACTGCCGACCTC  >  NC_002947/5312740‑5312999                                                                                                                                  |                                                                                                                                   aaaTCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCatat                                                                                                                              <  1:542767/136‑1 (MQ=255) aaaTCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCatat                                                                                                                              <  1:115180/136‑1 (MQ=255)    tCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTgg                                                                                                                           >  1:856959/1‑136 (MQ=255)           tCGACGGGAATGCTCTTTTCTTAGTTTGATCAAGTTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACAGCTGACCTCCTGCGTGCAATGCAGGCGCTCTCCCAGCTTAGCTTTGGCCCCGGATTTTGGTAGGTCt                                                                                                                    <  1:3164154/136‑1 (MQ=18)           tCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCt                                                                                                                    <  2:2775777/136‑1 (MQ=255)           tCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCt                                                                                                                    <  2:3056946/136‑1 (MQ=255)              aCGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTggg                                                                                                                 >  2:570972/1‑136 (MQ=255)                  gAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGa                                                                                                             >  2:2943206/1‑136 (MQ=255)                                    ttGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGc                                                                                           >  1:1661325/1‑136 (MQ=255)                                          aaGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCt                                                                                     <  1:3018576/136‑1 (MQ=255)                                           aGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTc                                                                                    <  1:3191356/136‑1 (MQ=255)                                           aGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTc                                                                                    <  2:2899365/136‑1 (MQ=255)                                           aGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTc                                                                                    <  1:245216/136‑1 (MQ=255)                                           aGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTc                                                                                    <  1:2273722/136‑1 (MQ=255)                                                aaGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTcaccac                                                                               <  2:733867/136‑1 (MQ=255)                                                aaGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTcaccac                                                                               >  1:1157096/1‑136 (MQ=255)                                                     aGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCttt                                                                          <  1:2126038/136‑1 (MQ=255)                                                     aGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCttt                                                                          <  2:2636371/136‑1 (MQ=255)                                                       tggtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTAt                                                                        <  1:1460639/136‑1 (MQ=255)                                                       tggtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTAt                                                                        <  1:1678716/136‑1 (MQ=255)                                                       tgggggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTAt                                                                        <  1:109757/136‑1 (MQ=255)                                                         gtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGt                                                                                        >  1:666373/1‑118 (MQ=255)                                                         gtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGt                                                                                        <  2:666373/118‑1 (MQ=255)                                                         gtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTc                                                                                    >  2:3045403/1‑122 (MQ=255)                                                         gtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTc                                                                                    <  1:3045403/122‑1 (MQ=255)                                                         gtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATcc                                                                      >  2:1999069/1‑136 (MQ=255)                                                         gtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATcc                                                                      >  2:1095061/1‑136 (MQ=255)                                                         gtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATcc                                                                      >  2:2162715/1‑136 (MQ=255)                                                         gtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATcc                                                                      >  2:324009/1‑136 (MQ=255)                                                         gtggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATcc                                                                      >  2:664145/1‑136 (MQ=255)                                                          tggAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCGTCACCACTCTTTATCCa                                                                     >  2:2740173/1‑136 (MQ=255)                                                               ccAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGc                                                                >  2:2224321/1‑136 (MQ=255)                                                                 aaGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCAt                                                              <  2:2608358/136‑1 (MQ=255)                                                                        aTCGAACCGCTGACCTCCTGCGTGCTAGGCAGGCGCTCTCCCAGCTGAGCTATGCCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGc                                                       <  1:3038979/136‑1 (MQ=255)                                                                          cGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTc                                                     >  1:2856695/1‑136 (MQ=255)                                                                           gAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTATATCCAGAGGCATGGGGTGCTCa                                                    >  2:1925900/1‑136 (MQ=255)                                                                            aaCCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCaa                                                   >  1:334612/1‑136 (MQ=255)                                                                               cGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTGTTTATCCAGAGGCATGGGGTGCTCAACAt                                                >  2:2656549/1‑136 (MQ=255)                                                                                    aCCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTccaa                                           >  2:784678/1‑136 (MQ=255)                                                                                           gCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAAt                                    <  1:1095061/136‑1 (MQ=255)                                                                                             gTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTg                                  <  1:1773206/136‑1 (MQ=255)                                                                                                 aaGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAg                              >  2:2384144/1‑136 (MQ=255)                                                                                                 aaGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGAGTGCTGAACATTCCAACCAAAATTGGTat                              >  2:1907473/1‑135 (MQ=255)                                                                                                     caggcGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCt                          <  2:2290495/136‑1 (MQ=255)                                                                                                      aggcGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTg                         >  1:877587/1‑136 (MQ=255)                                                                                                      aggcGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTg                         <  1:664145/136‑1 (MQ=255)                                                                                                       ggcGCTCTCCCAGCTGAGCTTTGGCCCCGCATATTGGTTGGTCTGGGCAGTTTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTgg                        <  1:1907473/136‑1 (MQ=255)                                                                                                         cgcTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCACAGGCATGGGGTGCTCAACATTACAACCAAAATTTGTAGGTATGGGc                      >  1:2411063/1‑136 (MQ=255)                                                                                                          gcTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCt                                                                                                                    >  1:533242/1‑41 (MQ=255)                                                                                                          gcTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCt                                                                                                                    <  2:533242/41‑1 (MQ=255)                                                                                                           ctctCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTGGGCAg                    >  1:1751545/1‑136 (MQ=255)                                                                                                           ctctCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTGGGCAg                    >  2:2889469/1‑136 (MQ=255)                                                                                                                   gCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTGGGTCTGGGCAGATTTGAAc            <  1:3206797/136‑1 (MQ=255)                                                                                                                   gCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTGGGCAGATTTGAAc            <  1:1058558/136‑1 (MQ=255)                                                                                                                     tGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTGGGCAGATTTGAACTg          <  1:1881838/136‑1 (MQ=255)                                                                                                                        gCTATGGCCCCGCATATTGGTAGGTCGGGGCAGAATTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCCGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTGGGCAGATTTGAACTGCCg       <  1:1677043/136‑1 (MQ=255)                                                                                                                           aTGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCAGGCTTTATCCAGAGGCATGGGGTGCTCAACATACCACCCAAAATTGGTAGGTCTGGGCAGATTTGAACTGCCGccc    >  1:3174267/1‑136 (MQ=255)                                                                                                                           aTGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTGGGCAGATTTGAACTGCCGAcc    <  1:2113996/136‑1 (MQ=255)                                                                                                                           aTGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTGGGCAGATTTGAACTGCCGAcc    <  1:1328312/136‑1 (MQ=255)                                                                                                                             ggCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTGGGCAGATTTGAACTGCCGACCTc  <  1:2943206/136‑1 (MQ=255)                                                                                                                             ggCCCCGCATATTGGTAGGTCTGGGCAGAGTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAATATTGGTAGGTCTGGGCAGATTTGAACTGCCGACCTc  <  1:3077540/136‑1 (MQ=255)                                                                                                                                  |                                                                                                                                   AAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATCCAGAGGCATGGGGTGCTCAACATTCCAACCAAAATTGGTAGGTCTGGGCAGATTTGAACTGCCGACCTC  >  NC_002947/5312740‑5312999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.