New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2057943	13 (0.780)	4 (0.270)	4/254	1.4	30.1%	intergenic (+27/‑116)	aroC/PP_1831	chorismate synthase/membrane protein
	?	NC_002947	= 2058017	7 (0.470)					intergenic (+101/‑42)	aroC/PP_1831	chorismate synthase/membrane protein

CCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2057784‑2057943 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcttcgcgggtGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTTGCAGTTGGATCAGCGCTGGCCCAGCACCGGGGTATTCACTTGCAC  <  NC_002947/2058017‑2057881                                                                                                                                                                                                                                                                                                           CCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGTTGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCT                                                                                                                                                     <  2:5657/150‑1        GTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTC                                                                                                                                                    <  1:118113/144‑1        GTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTC                                                                                                                                                    >  2:118113/1‑144                                                                            CCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGG                                                                          >  2:246326/1‑150                                                                                      CAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTA                                                                <  1:246326/150‑1                                                                                                                 CCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGC                                                           >  1:151574/1‑128                                                                                                                 CCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGC                                                           <  2:151574/128‑1                                                                                                                                                    CCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTTGCAGTTGGATCAGCGCTGGCCCAGCACCGGGGTATTCACTTGCAC  >  2:92250/1‑150                                                                                                                                                                                                                                                                                                           CCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2057784‑2057943 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcttcgcgggtGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTTGCAGTTGGATCAGCGCTGGCCCAGCACCGGGGTATTCACTTGCAC  <  NC_002947/2058017‑2057881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.