New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	401360 =	12 (0.720)	3 (0.200)	3/260	1.7	25.1%	coding (943/1059 nt)	PP_0334	transposase
	?	NC_002947	3970871 =	7 (0.460)					coding (1033/1179 nt)	PP_3498	transposase

ATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGG  >  NC_002947/401212‑401497                                                                                                                                                     |                                                                                                                                           gtcagaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttcgattagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaag‑a                                                                                                                                          >  2:311169‑M1/149‑150 (MQ=255)          tcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttcgattagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGAt                                                                                                                                 <  2:181254‑M1/11‑1 (MQ=255)                                          gCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCt                                                                                                 >  1:26326/1‑150 (MQ=31)                                                                         gAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGCTACAGAGCGATCAGGTTTACCa                                                                  >  1:277879/1‑150 (MQ=17)                                                                            ccAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACg                                                               >  1:26034/1‑150 (MQ=32)                                                                                aatccgcagatttcgattagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAT‑CTGGCTGATCGGAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAAc                                                          <  2:158329‑M1/81‑1 (MQ=255)                                                                                     gCCTGATTCCGATCAGCCTGATGATCGCCGCCTCTTGCGCTTGCTATCCCGAGTTGGGCGCATGG‑AGGCGGCGATAAGGCTGTCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTTCCAACGCAAACcgaa                                                      <  1:350081/150‑1 (MQ=11)                                                                                            tCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGaaaaa                                               >  2:247173/1‑150 (MQ=32)                                                                                                aTCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCgg                                           >  1:115244/1‑150 (MQ=32)                                                                                                     ccAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcg                                      >  2:109865/1‑150 (MQ=32)                                                                                                      agcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaaGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAACAACCGGAggcg                                      <  2:63958‑M1/103‑1 (MQ=255)                                                                                                            atCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGa                               <  2:282284/150‑1 (MQ=32)                                                                                                                  gcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctct                         <  1:270368‑M1/115‑1 (MQ=255)                                                                                                                                 tATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt          <  1:109865/150‑1 (MQ=32)                                                                                                                                     ccGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCa      >  2:244287/1‑150 (MQ=32)                                                                                                                                     ccGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCa      >  1:83533/1‑150 (MQ=32)                                                                                                                                         cTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGATACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCgg  <  2:277879/150‑1 (MQ=17)                                                                                                                                                     |                                                                                                                                           ATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGG  >  NC_002947/401212‑401497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.