New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	511871 =	15 (0.900)	4 (0.250)	4/270	1.5	21.5%	intergenic (+8/‑140)	trpC/PP_0423	indole‑3‑glycerol phosphate synthase/hypothetical protein
	?	NC_002947	511893 =	15 (0.950)					intergenic (+30/‑118)	trpC/PP_0423	indole‑3‑glycerol phosphate synthase/hypothetical protein

GATGTGGAGCTGATGGCAATCAACGAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAAT  >  NC_002947/511723‑512012                                                                                                                                                     |                                                                                                                                                gacgctcagggccaggggttgatcggtcattgatccacctatgatgttgatttcactggcctcttcgcgggtaaacccgctcctacgacagggcgcgtacccgtgtaggagcgggcttgcccgcgaagaggccattacaggtacaaaaaa                                                                                                                                                >  2:182629‑M1/149‑150 (MQ=255)                      aaCGAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCttt                                                                                                                           >  2:235927/1‑150 (MQ=255)                       aCGAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCtttt                                                                                                                          >  2:100283/1‑150 (MQ=255)                         gAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCtttttt                                                                                                                        <  2:157284/150‑1 (MQ=255)                         gAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCtttttt                                                                                                                        <  1:28880/150‑1 (MQ=255)                                                                gcCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCTTGCCCGcgaaga                                                                                 <  1:164643/150‑6 (MQ=255)                                                                      cagcCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTGTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACggg                                                                          >  1:134139/1‑150 (MQ=255)                                                                              cctggAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑cc                                                                 <  1:289522/150‑1 (MQ=255)                                                                                             gCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCgg                                                  <  1:220048/150‑1 (MQ=255)                                                                                                            gCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAaga                                   <  2:321522/150‑1 (MQ=255)                                                                                                            gCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAaga                                   <  2:321533/150‑1 (MQ=255)                                                                                                                    agaagaCTGTTCAGCACCTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGG‑GCGCGTACCCGT‑GTAGGAGCGGGCTTGCCCGCGAAGAGGCCatta                           <  2:357768/150‑4 (MQ=14)                                                                                                                     gaagaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGa                          >  1:18907/1‑150 (MQ=255)                                                                                                                       agaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGG‑GCGCGTACCCGT‑GTAGGAGCGGGCTTGCCCGCGAAGAGGCCattacag                        <  1:295776/150‑7 (MQ=14)                                                                                                                           gcgaagaggccattacaggtacaaaaAAGCCGGCGTTTTTGCCGGCtttt                                                                                                                          <  1:364767‑M1/24‑1 (MQ=255)                                                                                                                           gcgaagaggccattacaggtacaaaaAAGCCGGCGTTTTTGCCGGCtttt                                                                                                                          >  2:364767‑M1/27‑50 (MQ=255)                                                                                                                                  cAACTGTACTGATCAAATGCAGCCGGCGTTTTGGCCGGCTTTTTTGTCCCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATa             <  1:235927/150‑1 (MQ=38)                                                                                                                                   gccattacaggtacaaagAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTc                                                                                    <  2:170644‑M1/62‑1 (MQ=255)                                                                                                                                   gccattacaggtacaaagAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTc                                                                                    >  1:170644‑M1/19‑80 (MQ=255)                                                                                                                                             aTCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTACTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAAt  >  2:249843/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                GATGTGGAGCTGATGGCAATCAACGAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAAT  >  NC_002947/511723‑512012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.