| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1798642 = | 16 (0.960) | 5 (0.310) | 5/276 | 1.3 | 24.7% | coding (523/1128 nt) | lpxB | lipid‑A‑disaccharide synthase |
| ? | NC_002947 | 1798676 = | 15 (0.930) | coding (557/1128 nt) | lpxB | lipid‑A‑disaccharide synthase | |||||
GCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGCCGGGTGTGCGCTTC > NC_002947/1798494‑1798791 | gcggcAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCg > 2:85007/1‑150 (MQ=255) gcgTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCcgcgc < 2:349537/150‑1 (MQ=255) cgcgAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGctgggc < 1:261624/150‑1 (MQ=255) caacacgaagcgcacacccggcacttgttggctgaggcgctcggcggcgtcgaggaacagcgcgcccaagcgccctacttcgccaccccggctgcccggcatcaacgccaccaccggcccctCGCCCAGGCCGCGCGTGCCGCGctgggc > 1:148015‑M1/123‑150 (MQ=255) aGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGctgggcctggg < 2:301505/150‑1 (MQ=255) aagcgcacacccggcacttgttggctgaggcgctcggcggcgtcgaggaacagcgcgcccaagcgccctacttcgccaccccggctgcccggcatcaacgccaccaccggcccctCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGa > 1:120929‑M1/116‑150 (MQ=255) tGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAg > 2:175307/1‑150 (MQ=255) gcgcacacccggcacttgttggctgaggcgctcggcggcgtcgaggaacagcgcgcccaagcgccctacttcgccaccccggctgcccggcatcaacgccaccaccggcccctCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAgg > 2:299154‑M1/114‑150 (MQ=255) cTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCg > 2:43769/1‑150 (MQ=255) cGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCgg < 2:320662/150‑1 (MQ=255) gaggaacagcgcgcccaagcgccctacttcgccaccccggctgcccggcatcaacgccaccaccggcccctCGCCC‑GGCCGCGCGTGCCGCGctgggcct > 1:35985‑M1/72‑100 (MQ=255) gaggaacagcgcgcccaagcgccctacttcgccaccccggctgcccggcatcaacgccaccaccggcccctCGCCC‑GGCCGCGCGTGCCGCGctgggcct < 2:35985‑M1/29‑1 (MQ=255) gAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCTGGGCAGCCGGGGTGGCGAAGTa > 2:260291/1‑150 (MQ=255) gCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGtt < 1:85007/150‑1 (MQ=255) tttGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTc < 1:25722/150‑1 (MQ=255) ccGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAg > 2:248929/1‑150 (MQ=255) gACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGc > 1:218638/1‑150 (MQ=255) acCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCcaa > 1:716/1‑150 (MQ=255) gCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGcc > 1:45711/1‑150 (MQ=255) gCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGcc > 1:45710/1‑150 (MQ=255) ttGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGCCgg < 1:43769/150‑1 (MQ=255) CGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGCCGGGTGTGCGCTTc < 1:40698‑M1/150‑1 (MQ=255) | GCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGCCC‑GGCCGCGCGTGCCGCGCTGGGCCTGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGCCGGGTGTGCGCTTC > NC_002947/1798494‑1798791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |