New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2693837	15 (0.900)	4 (0.240)	3/286	1.9	25.8%	coding (33/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	= 2693873	8 (0.480)					coding (69/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein

CGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCA  >  NC_002947/2693695‑2693982                                                                                                                                               |                                                                                                                                                  cGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAggcctgg                                                                                                                                            <  1:257118/150‑1 (MQ=255)      cccATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAggcctgggcctg                                                                                                                                       <  1:385064/150‑1 (MQ=255)      cccATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAggcctgggcctg                                                                                                                                       <  1:385060/150‑1 (MQ=255)       ccATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGgcctgggcctgg                                                                                                                                      >  2:74517/1‑150 (MQ=255)       ccATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGgcctgggcctgg                                                                                                                                      >  2:74504/1‑150 (MQ=255)                   tgGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTTCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTccc                                                                                                                          >  1:228168/1‑150 (MQ=255)                   tgGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTTCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTccc                                                                                                                          >  1:228144/1‑150 (MQ=255)                      tAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTcccagg                                                                                                                       <  1:355123/150‑1 (MQ=255)                      tAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTcccagg                                                                                                                       <  1:162430/150‑1 (MQ=255)                          ggCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAggcctgggcctgggaagccaacgccaggccca                                                                                                                   <  1:74504‑M1/150‑33 (MQ=255)                          ggCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAggcctgggcctgggaagccaacgccaggccca                                                                                                                   <  1:74517‑M1/150‑33 (MQ=255)                                       gcgcTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAcgcctgggcctgggaagccaacgccaggcccaggcctgcgaggac                                                                                                      >  2:187742‑M1/1‑105 (MQ=255)                                                                  acCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAcgcctgggcctgggaagccaacgccaggcccaggcctgcgaggacgcactatgaaaggttcgttcgcatcgg                                                                           <  1:187742‑M1/150‑73 (MQ=255)                                                                      tCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGa                                                                       >  1:71681/1‑150 (MQ=255)                                                                      tCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGa                                                                       >  1:71685/1‑150 (MQ=255)                                                                                 cTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGc                                                            <  1:26110/150‑1 (MQ=255)                                                                                       tGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTc                                                      >  1:332818/1‑150 (MQ=255)                                                                                                   aaGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATggcacgtcg                                          >  1:116650/1‑150 (MQ=255)                                                                                                            ccGATGCGAACGAACCTTTCATAGTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGtgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggt                                 <  1:187742‑M2/150‑79 (MQ=255)                                                                                                                                       gTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGtgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagcccggccggcagcgc      >  2:187742‑M2/1‑45 (MQ=255)                                                                                                                                           tCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCa  >  2:350697/1‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                  CGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCA  >  NC_002947/2693695‑2693982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.