New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3949906	8 (0.480)	3 (0.220)	3/230	1.5	34.4%	coding (109/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	= 3949935	5 (0.370)					coding (80/1797 nt)	PP_3483	type II secretion system protein

GCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGC  >  NC_002947/3949796‑3950075                                                                                                                                            |                                                                                                                                             ctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAg                                                                                                                                    >  2:305429‑M1/84‑150 (MQ=255)                        tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCAGGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGAATACATCCTGGGGGAGCGGGCATGCCCGCGAAGACGTCg                                                                                                             <  2:375060/150‑1 (MQ=255)                                      gCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGCCGAGGGCGGTGCCGGCTTTGCa                                                                                               >  1:320665/1‑150 (MQ=39)                                              cAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgg                                                                                       >  2:259262/1‑150 (MQ=255)                                               cgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg                                                                                                                                 <  1:365965‑M1/70‑1 (MQ=255)                                               cgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg                                                                                                                                 >  2:365965‑M1/38‑107 (MQ=255)                                                                                     ggtcGGGGTCAGGCCCGCGCCCCCGGGTACAGCTGTGGTCTGGGGGCTTCTTCCATCGTTTGGGCGGGGGCTTGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGc                                                <  1:127481/148‑1 (MQ=255)                                                                                                   ccGCTCCCACAGGTACATCACAGGTGTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaattttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgac                                  <  2:255980‑M2/150‑109 (MQ=255)                                                                                                   CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCg                                  <  1:84160‑M1/150‑1 (MQ=255)                                                                                                       tCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgcc                              >  1:342782‑M2/1‑38 (MQ=255)                                                                                                       tCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgcc                              <  2:342782‑M2/150‑113 (MQ=255)                                                                                                       TCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAgg                              <  1:333661‑M1/150‑1 (MQ=255)                                                                                                             AGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGCCGCAgg                              <  1:74327‑M1/144‑1 (MQ=255)                                                                                                             AGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGCCGCAgg                              >  2:74327‑M1/1‑144 (MQ=255)                                                                                                                                   cTGCATACATCGTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGcgccgc  <  2:266704/150‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             GCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGC  >  NC_002947/3949796‑3950075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.