New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3953036 =	10 (0.600)	3 (0.220)	3/230	1.5	31.5%	intergenic (‑34/+161)	PP_3486/PP_3487	cytochrome c/hypothetical protein
	?	NC_002947	3953152 =	5 (0.370)					intergenic (‑150/+45)	PP_3486/PP_3487	cytochrome c/hypothetical protein

ATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACC  >  NC_002947/3953025‑3953301                                                                                                                                |                                                                                                                                                      tgcGCACGCCGGGTGGGTGGGGCCTTGCGGCGCCATGGGGGGGCGCCGCCCCCCCGCCTGTGGCAGCTCACGCGAATAATGTGGGTCGGGGGGCGGCCGCCTTCCGCGACGAATGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCaa                                                                                                                                 <  2:277829/148‑1 (MQ=255)      ccgCCCTGTGGGCGCGGCCTTGCCTCGCGAACGGGCTGCGCCGCAGCCCCGGCCGTGGCAGCACACGCGCAGAAAGCGGGGAGCGCTGCGCGCCCCTTTCGCGACGCATGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTccc                                                                                                                            <  2:377027/148‑1 (MQ=255)                              tcgcgaaaggagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacaAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCaccga                                                                                                    >  1:283723‑M2/99‑150 (MQ=255)                                 cgaaaggagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacaAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCaccgaccg                                                                                                 >  2:216972‑M2/96‑150 (MQ=255)                                  gaaaggagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagcccgttggcgacgcaaggccgcgcccccaAAAGCGGATGCCCCAGAGGCCAAATACCCAGGCGGCCCAAGataaacacccccccg                                                                                                >  1:322922‑M2/95‑144 (MQ=255)                                     gGGGCTGCTGCGCAGCCCTGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCa                                                                                             <  2:18459‑M1/149‑1 (MQ=255)                                       GGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGCCcggcccgc                                                                                           <  1:211559‑M1/150‑4 (MQ=255)                                        gCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCg                                                                                          >  1:53942/1‑150 (MQ=255)                                                                      aaGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCaa                                                            >  2:11580/1‑150 (MQ=255)                                                                                cgaaaggAGCGCGCAGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTgg                                                  >  1:66154/6‑150 (MQ=255)                                                                                                                       gctcccacaAAAGCGGATGCCACAGAGGCCAAGTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGc           <  1:216972‑M2/141‑1 (MQ=255)                                                                                                                             acaAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATc     >  1:331691‑M2/4‑150 (MQ=255)                                                                                                                             acaAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATc     >  1:331719‑M2/4‑150 (MQ=255)                                                                                                                                aaaGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCAcc  <  1:143415/150‑1 (MQ=255)                                                                                                                                aaaGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCAcc  >  2:12920/1‑150 (MQ=255)                                                                                                                                |                                                                                                                                                      ATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACC  >  NC_002947/3953025‑3953301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.